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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9409008	T-C	HET	INTERGENIC
SBS	Chr1	12111074	G-A	HET	INTERGENIC
SBS	Chr1	14264131	G-A	HET	UTR_5_PRIME
SBS	Chr1	18779889	C-T	HET	INTERGENIC
SBS	Chr1	25344272	A-C	HET	SYNONYMOUS_CODING
SBS	Chr1	26550665	G-A	HET	INTERGENIC
SBS	Chr1	37014910	C-T	HOMO	INTERGENIC
SBS	Chr2	16264112	A-T	HET	UTR_3_PRIME
SBS	Chr2	30370446	C-T	HOMO	INTERGENIC
SBS	Chr3	1444216	C-G	HET	INTERGENIC
SBS	Chr4	5594785	G-A	HET	INTERGENIC
SBS	Chr4	13068376	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23020
SBS	Chr4	26658282	C-T	HET	INTERGENIC
SBS	Chr5	8829923	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15580
SBS	Chr5	21733404	G-A	HET	INTERGENIC
SBS	Chr6	5351298	A-G	HET	INTERGENIC
SBS	Chr7	8750685	G-C	HET	INTERGENIC
SBS	Chr7	26042304	G-A	HET	INTERGENIC
SBS	Chr8	4421356	C-T	HET	INTERGENIC
SBS	Chr8	12139944	C-T	HET	INTERGENIC
SBS	Chr9	384888	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	384889	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01530
SBS	Chr9	12693496	G-T	HET	INTERGENIC
SBS	Chr11	9959624	G-A	HET	INTERGENIC
SBS	Chr11	16101895	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28010
SBS	Chr11	20978926	T-C	HET	INTERGENIC
SBS	Chr11	28875326	A-C	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	82831	82840	9	LOC_Os08g01110
Deletion	Chr6	246341	246344	3
Deletion	Chr10	1059653	1059672	19
Deletion	Chr3	3467603	3467615	12	LOC_Os03g06835
Deletion	Chr7	4907523	4907526	3
Deletion	Chr5	5383225	5383229	4
Deletion	Chr11	6376110	6376113	3
Deletion	Chr4	7936832	7936834	2
Deletion	Chr8	9124972	9125180	208	LOC_Os08g15080
Deletion	Chr6	9670927	9671120	193
Deletion	Chr8	9759308	9759311	3
Deletion	Chr10	11934578	11934592	14
Deletion	Chr5	12818575	12818578	3
Deletion	Chr11	14435434	14435444	10
Deletion	Chr12	14536094	14536095	1
Deletion	Chr1	14845232	14845238	6
Deletion	Chr12	16122049	16122058	9
Deletion	Chr11	18165801	18165805	4
Deletion	Chr9	19873957	19873959	2
Deletion	Chr7	21165073	21165090	17
Deletion	Chr10	22462909	22462913	4
Deletion	Chr7	23446842	23446854	12
Deletion	Chr12	23639306	23639307	1
Deletion	Chr7	23866986	23866987	1
Deletion	Chr12	23941845	23941850	5
Deletion	Chr8	26283049	26283128	79
Deletion	Chr1	26889679	26889681	2
Deletion	Chr5	27322119	27322127	8	LOC_Os05g47680
Deletion	Chr1	28034970	28034979	9	LOC_Os01g48874
Deletion	Chr2	28213943	28213948	5
Deletion	Chr6	30204846	30204847	1
Deletion	Chr2	31192107	31192109	2
Deletion	Chr2	33290718	33290725	7
Deletion	Chr1	38944785	38944787	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	32112561	32112561	1
Insertion	Chr2	8412118	8412119	2
Insertion	Chr7	1186731	1186740	10
Insertion	Chr8	16438848	16438855	8
Insertion	Chr2	16915080	16915081	2
Insertion	Chr2	19353409	19353410	2	LOC_Os02g32650

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14538996	14625451	LOC_Os04g25300
Inversion	Chr1	18805435	18949637	LOC_Os01g34374
Inversion	Chr5	24990031	25103862

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6225688	Chr9	14083524	LOC_Os11g11240
Translocation	Chr6	17809648	Chr4	14538997	LOC_Os06g30700

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