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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1087506	G-T	HOMO	INTERGENIC
SBS	Chr1	29623705	G-A	HET	INTERGENIC
SBS	Chr1	37231163	A-G	HET	INTERGENIC
SBS	Chr1	6586900	C-T	HET	INTERGENIC
SBS	Chr10	12427593	A-G	HOMO	INTERGENIC
SBS	Chr10	4892263	C-T	HET	INTERGENIC
SBS	Chr10	8324147	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g16700
SBS	Chr10	887198	C-T	HOMO	INTERGENIC
SBS	Chr12	22331377	C-A	HOMO	INTRON
SBS	Chr12	8145972	G-T	HOMO	INTERGENIC
SBS	Chr2	18958734	C-T	HET	INTERGENIC
SBS	Chr2	30298962	G-A	HET	INTRON
SBS	Chr2	33274011	G-A	HET	INTERGENIC
SBS	Chr3	13816384	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	14108697	T-C	HET	INTRON
SBS	Chr4	20233497	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	21473595	G-A	HOMO	INTRON
SBS	Chr4	21473596	G-C	HOMO	INTRON
SBS	Chr4	28969918	T-C	HET	INTERGENIC
SBS	Chr4	6821733	C-A	HET	INTERGENIC
SBS	Chr5	5340352	A-T	HET	INTRON
SBS	Chr6	12282169	A-C	HOMO	INTERGENIC
SBS	Chr6	20065711	T-G	HET	INTERGENIC
SBS	Chr6	30851061	A-T	HET	INTERGENIC
SBS	Chr6	4056883	G-C	HET	INTERGENIC
SBS	Chr6	6964454	C-A	HOMO	INTERGENIC
SBS	Chr7	14951439	A-G	HET	INTERGENIC
SBS	Chr7	27026069	G-A	HET	INTERGENIC
SBS	Chr7	7853027	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13680
SBS	Chr8	14879252	T-A	HOMO	INTRON
SBS	Chr8	6855816	A-G	HOMO	INTERGENIC
SBS	Chr9	14929822	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g24990

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1546566	1546574	8
Deletion	Chr6	2360933	2360935	2
Deletion	Chr11	4277991	4288486	10495	4
Deletion	Chr11	4293211	4293232	21
Deletion	Chr9	5268712	5268728	16
Deletion	Chr11	5800247	5800300	53	LOC_Os11g10570
Deletion	Chr8	6028526	6029945	1419
Deletion	Chr7	6101139	6101160	21
Deletion	Chr6	7313083	7313089	6
Deletion	Chr7	9291972	9291974	2
Deletion	Chr6	15275892	15275896	4	LOC_Os06g26110
Deletion	Chr6	15275897	15275901	4	LOC_Os06g26110
Deletion	Chr7	17646317	17646318	1
Deletion	Chr3	18645499	18645508	9
Deletion	Chr11	20516153	20516164	11
Deletion	Chr1	24213564	24213569	5	LOC_Os01g42590
Deletion	Chr3	24648122	24648137	15
Deletion	Chr5	26349362	26349371	9	LOC_Os05g45420
Deletion	Chr8	26991846	26991850	4	LOC_Os08g42700
Deletion	Chr1	29624299	29624312	13

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	22924134	22924137	4
Insertion	Chr3	2135802	2135803	2
Insertion	Chr5	5300443	5300443	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18624993	39124993
Inversion	Chr1	29223476	29654674	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6028531	Chr1	38258381	LOC_Os01g65890
Translocation	Chr8	6029940	Chr1	38258341	LOC_Os01g65890
Translocation	Chr12	8685297	Chr5	7821673
Translocation	Chr12	8797886	Chr5	7826156
Translocation	Chr4	34970331	Chr2	26794092

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