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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28124056	G-A	HOMO	INTERGENIC
SBS	Chr10	9100389	G-C	HET	INTERGENIC
SBS	Chr11	17415130	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29970
SBS	Chr11	7224194	G-T	HOMO	INTERGENIC
SBS	Chr12	17651395	T-C	HOMO	INTERGENIC
SBS	Chr12	27207326	C-A	HOMO	INTERGENIC
SBS	Chr2	10071459	T-A	HET	INTERGENIC
SBS	Chr2	30277452	G-T	HOMO	INTRON
SBS	Chr3	12115406	T-C	HET	INTERGENIC
SBS	Chr3	32039567	G-A	HOMO	INTRON
SBS	Chr3	35763067	C-A	HET	INTERGENIC
SBS	Chr4	19950274	G-T	HET	INTERGENIC
SBS	Chr4	20454335	C-T	HET	INTERGENIC
SBS	Chr4	31617483	G-T	HET	INTERGENIC
SBS	Chr4	34563303	T-A	HET	INTERGENIC
SBS	Chr5	12431699	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	19901817	C-A	HET	INTERGENIC
SBS	Chr6	7197234	G-A	HET	INTRON
SBS	Chr7	16149679	G-A	HET	INTERGENIC
SBS	Chr7	20957991	G-A	HET	INTERGENIC
SBS	Chr7	20957992	C-G	HET	INTERGENIC
SBS	Chr7	25544766	A-T	HOMO	INTERGENIC
SBS	Chr7	6894587	C-T	HOMO	INTERGENIC
SBS	Chr8	24012141	G-T	HET	INTERGENIC
SBS	Chr8	27888416	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44310
SBS	Chr8	27888420	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44310
SBS	Chr9	20118902	T-A	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	688702	688703	1
Deletion	Chr7	1516472	1516479	7
Deletion	Chr8	1542703	1542704	1
Deletion	Chr12	1715627	1715630	3	LOC_Os12g04090
Deletion	Chr6	1941814	1941835	21
Deletion	Chr3	2079806	2079819	13
Deletion	Chr5	2664869	2664870	1
Deletion	Chr1	4426278	4426279	1
Deletion	Chr12	4870777	4870778	1
Deletion	Chr9	4998732	4998753	21
Deletion	Chr1	10595063	10595064	1
Deletion	Chr1	10730004	10730038	34
Deletion	Chr8	17010588	17010590	2	LOC_Os08g27900
Deletion	Chr11	18827746	18827753	7
Deletion	Chr4	19983768	19983771	3
Deletion	Chr9	22886345	22886357	12
Deletion	Chr4	24024855	24024880	25
Deletion	Chr7	25417998	25418010	12
Deletion	Chr11	26843203	26843208	5
Deletion	Chr4	31769981	31769990	9	LOC_Os04g53350
Deletion	Chr1	34079429	34079473	44
Deletion	Chr4	35235460	35235473	13

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	41400321	41400324	4
Insertion	Chr10	20807981	20807985	5
Insertion	Chr11	3645982	3645985	4
Insertion	Chr12	23490639	23490640	2
Insertion	Chr4	2305618	2305618	1
Insertion	Chr6	23637566	23637566	1
Insertion	Chr9	16438837	16438838	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr10	11698633	12038171
Inversion	Chr2	16310426	16353668
Inversion	Chr2	16310591	16355471

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	15966646	Chr2	16353670
Translocation	Chr8	17749950	Chr2	33659789	LOC_Os08g29000
Translocation	Chr8	17749953	Chr2	16310425	LOC_Os08g29000
Translocation	Chr7	18423824	Chr6	16507065	LOC_Os06g28960
Translocation	Chr9	20666146	Chr4	16367967

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