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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7611572	C-A	HOMO	INTERGENIC
SBS	Chr1	11675171	T-A	HOMO	INTERGENIC
SBS	Chr1	40034610	C-T	HET	INTERGENIC
SBS	Chr2	689138	A-G	HOMO	INTRON
SBS	Chr2	18357447	A-T	HET	INTRON
SBS	Chr3	10223426	G-A	HET	INTERGENIC
SBS	Chr3	20901257	C-A	HOMO	INTERGENIC
SBS	Chr4	19480948	C-T	HET	INTRON
SBS	Chr4	19480949	C-T	HET	INTRON
SBS	Chr4	23527673	G-C	HOMO	INTRON
SBS	Chr5	13389400	T-A	HET	START_GAINED	LOC_Os05g23430
SBS	Chr5	13389401	G-A	HET	UTR_5_PRIME
SBS	Chr5	15817331	T-A	HET	INTERGENIC
SBS	Chr5	20369121	T-C	HET	INTERGENIC
SBS	Chr6	5379460	T-G	HET	INTERGENIC
SBS	Chr6	8575917	T-G	HET	INTERGENIC
SBS	Chr6	12036566	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20840
SBS	Chr6	17470260	G-T	HOMO	INTERGENIC
SBS	Chr6	22677815	C-T	HOMO	INTERGENIC
SBS	Chr7	7601327	G-A	HOMO	INTERGENIC
SBS	Chr7	11370323	A-C	HET	INTRON
SBS	Chr8	21134301	G-A	HOMO	INTERGENIC
SBS	Chr9	13357748	G-A	HOMO	INTERGENIC
SBS	Chr11	1824720	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g04390
SBS	Chr11	10385630	G-A	HET	INTERGENIC
SBS	Chr11	15600559	C-G	HOMO	INTERGENIC
SBS	Chr11	21395155	G-T	HET	INTERGENIC
SBS	Chr11	21979885	G-A	HET	INTERGENIC
SBS	Chr12	1333368	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g03420
SBS	Chr12	2516603	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	3995526	A-G	HOMO	INTERGENIC
SBS	Chr12	12771937	C-T	HET	INTRON
SBS	Chr12	19221222	C-A	HET	INTERGENIC
SBS	Chr12	26028236	A-C	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1971049	1971051	2
Deletion	Chr8	2851406	2851420	14
Deletion	Chr12	4099059	4099060	1
Deletion	Chr2	4229985	4229991	6
Deletion	Chr3	4949939	4949940	1
Deletion	Chr4	5675876	5675877	1
Deletion	Chr11	5785664	5785665	1
Deletion	Chr5	6539473	6539474	1
Deletion	Chr6	6712802	6712832	30	LOC_Os06g12380
Deletion	Chr6	6744453	6744470	17	LOC_Os06g12440
Deletion	Chr6	6926001	6959000	33000	7
Deletion	Chr4	7679843	7679847	4	LOC_Os04g13780
Deletion	Chr8	8193551	8193596	45
Deletion	Chr12	9548516	9548523	7	LOC_Os12g16670
Deletion	Chr7	10031895	10031896	1
Deletion	Chr3	12622127	12622134	7
Deletion	Chr10	17525285	17525296	11
Deletion	Chr7	18399682	18399688	6
Deletion	Chr9	20532532	20532537	5
Deletion	Chr5	20816867	20816871	4	LOC_Os05g35070
Deletion	Chr4	22901435	22901436	1
Deletion	Chr11	25756517	25756518	1
Deletion	Chr8	26620220	26620223	3
Deletion	Chr1	27413746	27413748	2
Deletion	Chr2	27419116	27419117	1
Deletion	Chr5	28617451	28617453	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	9425088	9425105	18
Insertion	Chr2	29365387	29365389	3	LOC_Os02g47980
Insertion	Chr9	16220472	16220474	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	18582916	19827998	LOC_Os07g33200
Inversion	Chr12	25162020	26757842	LOC_Os12g43090

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1877794	Chr2	13467176
Translocation	Chr9	5336548	Chr6	15614803

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