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Mutant Information |
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Mutant Name | FN963-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN963-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 33
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 15873160 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 18519552 | G-C | HET | INTERGENIC | |
SBS | Chr1 | 23693459 | A-T | HOMO | INTERGENIC | |
SBS | Chr2 | 1705888 | A-T | HET | INTERGENIC | |
SBS | Chr2 | 1705895 | T-A | HET | INTERGENIC | |
SBS | Chr2 | 4038160 | G-T | HET | UTR_3_PRIME | |
SBS | Chr2 | 8121988 | T-C | HOMO | INTERGENIC | |
SBS | Chr2 | 15720017 | G-T | HOMO | INTERGENIC | |
SBS | Chr2 | 24446755 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g40360 |
SBS | Chr2 | 33025226 | A-T | HOMO | INTERGENIC | |
SBS | Chr3 | 24443110 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 16387152 | C-T | HOMO | INTRON | |
SBS | Chr4 | 19768192 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g32770 |
SBS | Chr5 | 163384 | T-A | HOMO | INTRON | |
SBS | Chr5 | 163385 | T-A | HOMO | INTRON | |
SBS | Chr5 | 163393 | T-A | HOMO | INTRON | |
SBS | Chr5 | 20542035 | T-C | HOMO | INTERGENIC | |
SBS | Chr5 | 23657450 | A-T | HOMO | SPLICE_SITE_ACCEPTOR | LOC_Os05g40270 |
SBS | Chr5 | 23657451 | G-T | HOMO | SPLICE_SITE_ACCEPTOR | LOC_Os05g40270 |
SBS | Chr6 | 636948 | C-A | HET | INTRON | |
SBS | Chr6 | 13685791 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr6 | 13685792 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g23440 |
SBS | Chr8 | 22063043 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr8 | 24503083 | C-T | HOMO | INTERGENIC | |
SBS | Chr8 | 25100455 | G-A | HOMO | INTERGENIC | |
SBS | Chr9 | 7323237 | T-A | HOMO | INTERGENIC | |
SBS | Chr10 | 2451311 | C-T | HOMO | INTERGENIC | |
SBS | Chr10 | 13235033 | C-T | HOMO | INTRON | |
SBS | Chr11 | 17270329 | C-G | HET | INTERGENIC | |
SBS | Chr11 | 22899249 | T-A | HET | INTERGENIC | |
SBS | Chr11 | 23880083 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g40050 |
SBS | Chr12 | 14051562 | A-T | HET | INTERGENIC | |
SBS | Chr12 | 17936264 | T-C | HET | INTERGENIC |
Deletions: 18
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 788001 | 799000 | 11000 | LOC_Os06g02370 |
Deletion | Chr6 | 1591125 | 1591126 | 1 | |
Deletion | Chr1 | 6311254 | 6311262 | 8 | |
Deletion | Chr6 | 7570126 | 7570133 | 7 | |
Deletion | Chr6 | 7840385 | 7840390 | 5 | LOC_Os06g14050 |
Deletion | Chr1 | 8676028 | 8676030 | 2 | |
Deletion | Chr9 | 9964620 | 9964637 | 17 | |
Deletion | Chr2 | 16412037 | 16412039 | 2 | |
Deletion | Chr12 | 16523436 | 16524464 | 1028 | |
Deletion | Chr2 | 19704281 | 19704285 | 4 | |
Deletion | Chr4 | 19936807 | 19936824 | 17 | |
Deletion | Chr1 | 22316248 | 22316249 | 1 | |
Deletion | Chr11 | 22891528 | 22891541 | 13 | |
Deletion | Chr8 | 26093957 | 26093958 | 1 | |
Deletion | Chr4 | 26397473 | 26397478 | 5 | |
Deletion | Chr5 | 27142446 | 27142450 | 4 | |
Deletion | Chr2 | 34929293 | 34929301 | 8 | LOC_Os02g57030 |
Deletion | Chr1 | 41108774 | 41108775 | 1 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 10023519 | 10023520 | 2 | |
Insertion | Chr5 | 21765747 | 21765750 | 4 | |
Insertion | Chr1 | 40468997 | 40468999 | 3 | |
Insertion | Chr5 | 804708 | 804708 | 1 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr6 | 658863 | 1406152 | 2 |
Inversion | Chr6 | 787687 | 1406024 | LOC_Os06g03630 |
Inversion | Chr12 | 14756168 | 14826503 | LOC_Os12g25494 |
Inversion | Chr12 | 14756183 | 14826541 | LOC_Os12g25494 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 2978030 | Chr7 | 20101826 | |
Translocation | Chr8 | 10125733 | Chr6 | 18090448 | 2 |