Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15873160	G-A	HET	INTERGENIC
SBS	Chr1	18519552	G-C	HET	INTERGENIC
SBS	Chr1	23693459	A-T	HOMO	INTERGENIC
SBS	Chr10	13235033	C-T	HOMO	INTRON
SBS	Chr10	2451311	C-T	HOMO	INTERGENIC
SBS	Chr11	17270329	C-G	HET	INTERGENIC
SBS	Chr11	22899249	T-A	HET	INTERGENIC
SBS	Chr11	23880083	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40050
SBS	Chr12	14051562	A-T	HET	INTERGENIC
SBS	Chr12	17936264	T-C	HET	INTERGENIC
SBS	Chr2	15720017	G-T	HOMO	INTERGENIC
SBS	Chr2	1705888	A-T	HET	INTERGENIC
SBS	Chr2	1705895	T-A	HET	INTERGENIC
SBS	Chr2	24446755	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g40360
SBS	Chr2	33025226	A-T	HOMO	INTERGENIC
SBS	Chr2	4038160	G-T	HET	UTR_3_PRIME
SBS	Chr2	8121988	T-C	HOMO	INTERGENIC
SBS	Chr3	24443110	C-T	HOMO	INTERGENIC
SBS	Chr4	16387152	C-T	HOMO	INTRON
SBS	Chr4	19768192	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g32770
SBS	Chr5	163384	T-A	HOMO	INTRON
SBS	Chr5	163385	T-A	HOMO	INTRON
SBS	Chr5	163393	T-A	HOMO	INTRON
SBS	Chr5	20542035	T-C	HOMO	INTERGENIC
SBS	Chr5	23657450	A-T	HOMO	SPLICE_SITE_ACCEPTOR	LOC_Os05g40270
SBS	Chr5	23657451	G-T	HOMO	SPLICE_SITE_ACCEPTOR	LOC_Os05g40270
SBS	Chr6	13685791	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	13685792	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g23440
SBS	Chr6	636948	C-A	HET	INTRON
SBS	Chr8	22063043	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	24503083	C-T	HOMO	INTERGENIC
SBS	Chr8	25100455	G-A	HOMO	INTERGENIC
SBS	Chr9	7323237	T-A	HOMO	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	788001	799000	11000	LOC_Os06g02370
Deletion	Chr6	1591125	1591126	1
Deletion	Chr1	6311254	6311262	8
Deletion	Chr6	7570126	7570133	7
Deletion	Chr6	7840385	7840390	5	LOC_Os06g14050
Deletion	Chr1	8676028	8676030	2
Deletion	Chr9	9964620	9964637	17
Deletion	Chr2	16412037	16412039	2
Deletion	Chr12	16523436	16524464	1028
Deletion	Chr2	19704281	19704285	4
Deletion	Chr4	19936807	19936824	17
Deletion	Chr1	22316248	22316249	1
Deletion	Chr11	22891528	22891541	13
Deletion	Chr8	26093957	26093958	1
Deletion	Chr4	26397473	26397478	5
Deletion	Chr5	27142446	27142450	4
Deletion	Chr2	34929293	34929301	8	LOC_Os02g57030
Deletion	Chr1	41108774	41108775	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	40468997	40468999	3
Insertion	Chr10	10023519	10023520	2
Insertion	Chr5	21765747	21765750	4
Insertion	Chr5	804708	804708	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	658863	1406152	2
Inversion	Chr6	787687	1406024	LOC_Os06g03630
Inversion	Chr12	14756168	14826503	LOC_Os12g25494
Inversion	Chr12	14756183	14826541	LOC_Os12g25494

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2978030	Chr7	20101826
Translocation	Chr8	10125733	Chr6	18090448	2

Main menu