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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10886943	G-A	HET	INTERGENIC
SBS	Chr1	13639636	A-G	HET	INTERGENIC
SBS	Chr1	14073825	T-C	HET	INTERGENIC
SBS	Chr1	28867470	C-G	HET	INTERGENIC
SBS	Chr1	36284638	T-A	HET	INTRON
SBS	Chr1	36284649	T-C	HET	INTRON
SBS	Chr1	37824879	C-T	HET	INTRON
SBS	Chr1	42951362	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g74146
SBS	Chr2	4700718	T-G	HET	INTERGENIC
SBS	Chr2	4739015	A-G	HET	INTERGENIC
SBS	Chr2	13475455	G-C	HOMO	INTRON
SBS	Chr2	21789838	T-C	HET	INTRON
SBS	Chr2	23508454	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	23785751	G-C	HET	SYNONYMOUS_CODING
SBS	Chr2	28615401	G-A	HET	INTERGENIC
SBS	Chr3	7912048	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	12776654	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g22290
SBS	Chr5	10957895	A-T	HOMO	INTERGENIC
SBS	Chr7	6143085	A-G	HET	INTERGENIC
SBS	Chr7	18016107	G-A	HET	INTERGENIC
SBS	Chr7	26043903	T-A	HOMO	INTERGENIC
SBS	Chr8	6310129	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10710
SBS	Chr9	5249902	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09700
SBS	Chr9	12678612	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g21020
SBS	Chr9	12678613	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g21020
SBS	Chr10	7603952	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13980
SBS	Chr10	9065902	C-T	HET	INTERGENIC
SBS	Chr10	13105237	C-G	HET	INTRON
SBS	Chr10	18014287	T-A	HET	INTRON
SBS	Chr11	21168940	C-T	HOMO	INTERGENIC
SBS	Chr11	22447522	G-A	HOMO	INTERGENIC
SBS	Chr12	18201695	G-C	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1188942	1188950	8	LOC_Os04g02960
Deletion	Chr12	1202306	1202307	1
Deletion	Chr3	1811762	1811764	2
Deletion	Chr3	2195660	2195687	27
Deletion	Chr3	2576809	2576978	169	LOC_Os03g05310
Deletion	Chr6	3754404	3754405	1
Deletion	Chr8	8172430	8172447	17
Deletion	Chr8	9409463	9409472	9
Deletion	Chr1	12665841	12665844	3
Deletion	Chr9	13754580	13754581	1
Deletion	Chr12	15202001	15239000	37000	2
Deletion	Chr9	17116137	17116147	10
Deletion	Chr1	18035160	18035176	16
Deletion	Chr10	18294317	18294324	7
Deletion	Chr12	22175877	22176196	319
Deletion	Chr1	24327188	24327199	11
Deletion	Chr3	29345135	29345136	1	LOC_Os03g51280
Deletion	Chr6	30855352	30855357	5	LOC_Os06g50980
Deletion	Chr3	31134692	31134702	10	LOC_Os03g54770
Deletion	Chr4	31401870	31401878	8
Deletion	Chr1	31712615	31712621	6
Deletion	Chr1	39377002	39377008	6	LOC_Os01g67750

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	21612354	21612354	1
Insertion	Chr1	3763312	3763313	2
Insertion	Chr8	27722905	27722906	2
Insertion	Chr1	20579158	20579158	1
Insertion	Chr10	17838567	17838570	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4433922	4871496	LOC_Os04g08824
Inversion	Chr4	4433945	4871504	LOC_Os04g08824

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	368916	Chr2	26988859	LOC_Os02g44550
Translocation	Chr12	22176227	Chr3	29651848	LOC_Os12g36180

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