Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	290836	T-G	HET	INTRON
SBS	Chr10	4313159	C-T	HOMO	INTRON
SBS	Chr10	93931	C-T	HET	INTERGENIC
SBS	Chr10	9785387	C-T	HET	INTERGENIC
SBS	Chr11	25629170	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	3609412	C-T	HET	INTRON
SBS	Chr12	1521926	G-A	HET	INTRON
SBS	Chr12	22063418	C-A	HOMO	INTERGENIC
SBS	Chr12	22307835	C-T	HOMO	INTERGENIC
SBS	Chr12	599854	C-T	HOMO	INTRON
SBS	Chr2	31493568	T-A	HOMO	UTR_3_PRIME
SBS	Chr3	23328835	G-T	HET	INTERGENIC
SBS	Chr4	12356547	G-A	HOMO	INTERGENIC
SBS	Chr4	34731484	C-A	HOMO	INTERGENIC
SBS	Chr6	14631535	G-A	HET	INTERGENIC
SBS	Chr6	1636038	G-A	HET	INTERGENIC
SBS	Chr6	1636039	G-A	HET	INTERGENIC
SBS	Chr6	16917794	T-A	HET	INTERGENIC
SBS	Chr6	20857134	C-T	HET	INTERGENIC
SBS	Chr7	19611862	G-A	HOMO	INTERGENIC
SBS	Chr7	28445362	G-A	HET	INTERGENIC
SBS	Chr7	289250	T-C	HET	INTERGENIC
SBS	Chr7	29235791	C-T	HET	INTERGENIC
SBS	Chr8	8913550	C-G	HET	INTERGENIC
SBS	Chr9	11345886	G-T	HOMO	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2376025	2376026	1
Deletion	Chr7	4538645	4538654	9
Deletion	Chr11	4845589	4845596	7
Deletion	Chr2	7753705	7753714	9	LOC_Os02g14160
Deletion	Chr1	8010686	8010694	8
Deletion	Chr7	8547679	8547680	1
Deletion	Chr9	11997971	11997972	1
Deletion	Chr3	12130461	12130470	9
Deletion	Chr3	13507721	13507722	1
Deletion	Chr6	16454316	16454318	2
Deletion	Chr11	18514718	18514721	3
Deletion	Chr10	19072848	19072851	3
Deletion	Chr3	22394496	22394508	12
Deletion	Chr5	22573627	22573628	1
Deletion	Chr7	23495170	23495187	17
Deletion	Chr12	24259579	24259580	1
Deletion	Chr11	26318862	26318864	2	LOC_Os11g43640
Deletion	Chr2	28786767	28786769	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2580941	2580944	4
Insertion	Chr5	805954	805954	1
Insertion	Chr7	22135654	22135654	1
Insertion	Chr9	13499710	13499711	2
Insertion	Chr9	19665088	19665089	2	LOC_Os09g32952
Insertion	Chr9	3178230	3178231	2

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15815230	16225711	LOC_Os07g27210
Inversion	Chr7	15815736	16225714	LOC_Os07g27210
Inversion	Chr10	17330355	17360239	LOC_Os10g33130
Inversion	Chr10	17360235	17561836	LOC_Os10g33130
Inversion	Chr10	17451916	17946295	2
Inversion	Chr11	21036280	21747219	2
Inversion	Chr11	21549693	21747215	2
Inversion	Chr6	26245898	26401716	2
Inversion	Chr11	27282611	27382498	LOC_Os11g45090

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	3234375	Chr1	23346976
Translocation	Chr10	17939234	Chr3	28189965	2
Translocation	Chr10	17946294	Chr3	28189953	2
Translocation	Chr6	25434380	Chr2	19696643
Translocation	Chr6	25435507	Chr2	19696641
Translocation	Chr11	27382501	Chr4	32427188

Main menu