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| Mutant Information |
|---|
| Mutant Name | FN969-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN969-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26145566 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g46000 |
| SBS | Chr1 | 30060579 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g52290 |
| SBS | Chr1 | 32177648 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 32259833 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g56030 |
| SBS | Chr11 | 11642319 | G-A | HET | STOP_GAINED | LOC_Os11g20150 |
| SBS | Chr11 | 20479811 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 26798485 | G-A | HET | SPLICE_SITE_DONOR | LOC_Os11g44340 |
| SBS | Chr2 | 20958322 | C-T | HET | INTRON | |
| SBS | Chr2 | 31234032 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 10595725 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 10595726 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 23123639 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 28043010 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 3619847 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g07080 |
| SBS | Chr4 | 14281488 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 2292276 | C-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 23483936 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 17195471 | G-A | HET | INTRON | |
| SBS | Chr5 | 17708186 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 1335949 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 18091776 | A-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr6 | 21307241 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 30792012 | C-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 3494487 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 20619581 | T-A | HET | INTRON | |
| SBS | Chr7 | 23997954 | C-T | HET | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 3956087 | 3956088 | 1 | |
| Deletion | Chr6 | 5371184 | 5371197 | 13 | |
| Deletion | Chr9 | 6676600 | 6676606 | 6 | LOC_Os09g11890 |
| Deletion | Chr2 | 7040655 | 7040680 | 25 | LOC_Os02g13210 |
| Deletion | Chr8 | 7619399 | 7619400 | 1 | |
| Deletion | Chr3 | 9428227 | 9428228 | 1 | |
| Deletion | Chr3 | 11275105 | 11275106 | 1 | |
| Deletion | Chr9 | 14924135 | 14924163 | 28 | |
| Deletion | Chr4 | 15219036 | 15219037 | 1 | |
| Deletion | Chr2 | 15620169 | 15620170 | 1 | |
| Deletion | Chr5 | 17305972 | 17305977 | 5 | LOC_Os05g29900 |
| Deletion | Chr1 | 24108320 | 24108324 | 4 | LOC_Os01g42410 |
| Deletion | Chr4 | 25176564 | 25176582 | 18 | |
| Deletion | Chr7 | 28234420 | 28234429 | 9 | LOC_Os07g47240 |
| Deletion | Chr7 | 28881856 | 28881864 | 8 | |
| Deletion | Chr1 | 31994024 | 31994047 | 23 | LOC_Os01g55530 |
| Deletion | Chr2 | 32059155 | 32059156 | 1 | LOC_Os02g52380 |
| Deletion | Chr4 | 34253679 | 34253709 | 30 | LOC_Os04g57570 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 12717709 | 12717709 | 1 | |
| Insertion | Chr12 | 2458904 | 2458904 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 6221390 | 6435791 | |
| Inversion | Chr6 | 6435799 | 6508491 | LOC_Os06g12160 |
No Translocation