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Mutant Information

Mutant Name	FN970-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN970-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11985154	G-T	HET	INTERGENIC
SBS	Chr1	22739063	C-A	HET	INTERGENIC
SBS	Chr1	27234683	C-A	HET	INTERGENIC
SBS	Chr1	9957089	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	1283673	T-C	HET	INTRON
SBS	Chr10	6857405	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g12320
SBS	Chr12	1206877	T-A	HET	INTERGENIC
SBS	Chr12	13169986	T-A	HET	INTERGENIC
SBS	Chr12	20072637	G-T	HOMO	INTERGENIC
SBS	Chr2	21395296	A-G	HET	INTERGENIC
SBS	Chr3	23402780	A-C	HOMO	INTERGENIC
SBS	Chr4	2428217	C-T	HET	INTRON
SBS	Chr4	2428222	T-A	HET	INTRON
SBS	Chr4	35356849	C-A	HET	INTERGENIC
SBS	Chr7	10221699	A-C	HET	INTERGENIC
SBS	Chr8	1367849	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03050
SBS	Chr9	3487370	C-T	HET	INTRON
SBS	Chr9	3487371	C-T	HET	INTRON

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	4635663	4635672	9
Deletion	Chr12	6762895	6762899	4	LOC_Os12g12300
Deletion	Chr5	11717121	11717125	4
Deletion	Chr3	14197916	14197920	4
Deletion	Chr2	19090828	19090831	3
Deletion	Chr8	27341692	27341693	1

No Insertion

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	22589518	22739110	LOC_Os01g40040
Inversion	Chr1	22589530	22739116	LOC_Os01g40040

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	17258625	Chr1	18259830	2
Translocation	Chr2	17258674	Chr1	18267183	2
Translocation	Chr4	22605224	Chr3	9031707	LOC_Os03g16369
Translocation	Chr4	22607004	Chr3	9031672	LOC_Os03g16369