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| Mutant Information |
|---|
| Mutant Name | FN971-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN971-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21210967 | T-A | HET | INTERGENIC | |
| SBS | Chr1 | 22836354 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g40450 |
| SBS | Chr1 | 22836405 | T-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr1 | 22836406 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g40450 |
| SBS | Chr1 | 27124484 | A-T | HOMO | INTRON | |
| SBS | Chr1 | 34128264 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 36530050 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr1 | 3769 | G-C | HET | INTRON | |
| SBS | Chr1 | 489665 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g01900 |
| SBS | Chr1 | 7428566 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 12577731 | C-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 18614223 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 27316699 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 27483937 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 16370279 | G-A | HET | INTRON | |
| SBS | Chr12 | 20757528 | T-G | HET | INTRON | |
| SBS | Chr12 | 22197660 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 12260682 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 24863934 | G-C | HET | UTR_5_PRIME | |
| SBS | Chr2 | 33892551 | T-C | HET | INTRON | |
| SBS | Chr2 | 8375002 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 10023127 | T-G | HET | INTERGENIC | |
| SBS | Chr3 | 16256420 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 22817387 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g41060 |
| SBS | Chr3 | 25162625 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 20419370 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 30646071 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 4633341 | A-G | HET | INTRON | |
| SBS | Chr4 | 6569280 | A-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 25919688 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g44560 |
| SBS | Chr9 | 18553903 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 2605471 | C-T | HET | INTRON | |
| SBS | Chr9 | 6512274 | A-T | HOMO | INTERGENIC |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1581573 | 1581580 | 7 | |
| Deletion | Chr6 | 4338064 | 4338065 | 1 | |
| Deletion | Chr5 | 7340433 | 7340434 | 1 | |
| Deletion | Chr6 | 9433990 | 9433994 | 4 | |
| Deletion | Chr11 | 17413658 | 17413661 | 3 | LOC_Os11g29970 |
| Deletion | Chr3 | 19309159 | 19309160 | 1 | |
| Deletion | Chr11 | 20054350 | 20054355 | 5 | LOC_Os11g34240 |
| Deletion | Chr3 | 33099943 | 33099944 | 1 |
No Insertion
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 4478005 | 20345712 | |
| Inversion | Chr11 | 5269916 | 7850120 | |
| Inversion | Chr2 | 31110685 | 31673546 | LOC_Os02g51700 |
| Inversion | Chr2 | 31110700 | 31676790 | LOC_Os02g51710 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 9274189 | Chr10 | 12475499 | |
| Translocation | Chr12 | 14845485 | Chr7 | 10252149 | LOC_Os07g17360 |
| Translocation | Chr3 | 15443476 | Chr1 | 22823274 | |
| Translocation | Chr3 | 15443484 | Chr1 | 22820688 | LOC_Os01g40420 |
| Translocation | Chr12 | 24156384 | Chr1 | 37771965 | LOC_Os12g39300 |