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| Mutant Information |
|---|
| Mutant Name | FN972-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN972-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17831606 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g32510 |
| SBS | Chr1 | 17835367 | A-C | HET | INTERGENIC | |
| SBS | Chr1 | 19476134 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g35184 |
| SBS | Chr1 | 30108577 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 14187524 | T-A | HET | INTERGENIC | |
| SBS | Chr10 | 15131196 | G-C | HET | INTERGENIC | |
| SBS | Chr10 | 17653811 | T-C | HET | INTRON | |
| SBS | Chr10 | 18970877 | A-T | HET | UTR_5_PRIME | |
| SBS | Chr10 | 2919652 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 13741064 | C-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 13800703 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 15961271 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 1885053 | T-A | HOMO | INTRON | |
| SBS | Chr12 | 5054723 | T-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 26908528 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g44440 |
| SBS | Chr2 | 29748783 | G-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 31588219 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 10356203 | G-A | HOMO | INTRON | |
| SBS | Chr3 | 14621758 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 19742876 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 15281455 | C-G | HET | INTERGENIC | |
| SBS | Chr5 | 29751990 | A-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 17221148 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 210662 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 28129050 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 14194093 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 19617788 | A-C | HET | INTERGENIC | |
| SBS | Chr7 | 22283838 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g37190 |
| SBS | Chr7 | 26381412 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 9994096 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 11206557 | A-G | HOMO | INTERGENIC |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 9041787 | 9041791 | 4 | |
| Deletion | Chr6 | 9744861 | 9744864 | 3 | |
| Deletion | Chr10 | 10167513 | 10167516 | 3 | LOC_Os10g20235 |
| Deletion | Chr9 | 15774733 | 15774740 | 7 | |
| Deletion | Chr1 | 23368111 | 23368117 | 6 | |
| Deletion | Chr11 | 24135500 | 24135511 | 11 | |
| Deletion | Chr6 | 25550658 | 25550671 | 13 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 7604087 | 7754876 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 11823884 | Chr4 | 7678412 | |
| Translocation | Chr8 | 19017312 | Chr1 | 39817531 | 2 |
| Translocation | Chr8 | 19017320 | Chr1 | 39821267 | LOC_Os08g30800 |
| Translocation | Chr11 | 28651344 | Chr1 | 18700218 |