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Mutant Information

Mutant Name	FN973-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN973-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 54

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5342844	A-G	HET	INTERGENIC
SBS	Chr1	13628531	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24180
SBS	Chr1	21426162	C-T	HOMO	STOP_GAINED	LOC_Os01g38229
SBS	Chr1	21949634	C-A	HOMO	INTERGENIC
SBS	Chr1	21949635	C-T	HOMO	INTERGENIC
SBS	Chr1	29907957	G-T	HOMO	INTERGENIC
SBS	Chr1	31559922	A-T	HET	INTRON
SBS	Chr1	33013612	A-T	HET	INTERGENIC
SBS	Chr1	36209468	G-A	HET	SPLICE_SITE_ACCEPTOR	LOC_Os01g62520
SBS	Chr2	11834854	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g20100
SBS	Chr2	22373778	G-C	HET	INTERGENIC
SBS	Chr2	24151272	A-G	HET	INTERGENIC
SBS	Chr2	24234525	A-C	HET	INTERGENIC
SBS	Chr2	24930721	T-C	HET	INTERGENIC
SBS	Chr3	6524068	T-C	HOMO	INTERGENIC
SBS	Chr3	13169460	A-C	HET	INTERGENIC
SBS	Chr3	14451889	G-A	HET	INTERGENIC
SBS	Chr3	29000352	A-G	HET	INTERGENIC
SBS	Chr3	32068976	G-T	HET	SPLICE_SITE_ACCEPTOR	LOC_Os03g56260
SBS	Chr3	32068981	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g56260
SBS	Chr4	11644522	T-C	HET	INTERGENIC
SBS	Chr4	16134926	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g27310
SBS	Chr4	16166936	C-T	HET	INTRON
SBS	Chr4	28419171	T-A	HET	INTERGENIC
SBS	Chr5	11645538	G-A	HET	INTERGENIC
SBS	Chr5	11645539	C-A	HET	INTERGENIC
SBS	Chr6	7058595	C-T	HET	INTERGENIC
SBS	Chr6	17618128	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30480
SBS	Chr7	12470709	T-C	HOMO	INTERGENIC
SBS	Chr7	16684879	T-A	HOMO	INTERGENIC
SBS	Chr7	16684880	C-G	HOMO	INTERGENIC
SBS	Chr8	1722442	T-G	HET	INTRON
SBS	Chr8	2500422	A-T	HET	INTERGENIC
SBS	Chr8	5670420	G-A	HOMO	INTERGENIC
SBS	Chr8	14323586	A-G	HOMO	INTRON
SBS	Chr8	19170691	G-A	HOMO	INTERGENIC
SBS	Chr9	4091276	C-T	HOMO	INTRON
SBS	Chr9	5140617	A-T	HET	INTRON
SBS	Chr9	5327283	G-C	HET	INTERGENIC
SBS	Chr9	6438999	G-T	HET	INTERGENIC
SBS	Chr9	18055128	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29680
SBS	Chr10	6048459	T-G	HET	INTERGENIC
SBS	Chr11	1148056	T-C	HET	INTERGENIC
SBS	Chr11	1400000	T-C	HET	INTERGENIC
SBS	Chr11	6507392	T-A	HET	INTERGENIC
SBS	Chr11	10433576	A-G	HOMO	INTERGENIC
SBS	Chr11	15961072	A-G	HOMO	INTERGENIC
SBS	Chr11	16249100	C-T	HOMO	INTERGENIC
SBS	Chr11	28803865	A-G	HET	INTERGENIC
SBS	Chr12	355590	C-A	HET	UTR_3_PRIME
SBS	Chr12	8922609	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	12145588	C-A	HET	INTERGENIC
SBS	Chr12	14379986	C-A	HET	INTRON
SBS	Chr12	22473804	T-C	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	223108	223116	8
Deletion	Chr11	339022	339023	1
Deletion	Chr5	693622	693623	1
Deletion	Chr3	1361070	1361071	1
Deletion	Chr11	1474654	1474662	8
Deletion	Chr5	1927604	1927607	3
Deletion	Chr5	1929842	1929843	1
Deletion	Chr12	5482149	5482153	4
Deletion	Chr1	8064237	8064238	1
Deletion	Chr1	11927106	11927109	3
Deletion	Chr10	12010476	12010478	2
Deletion	Chr2	12300572	12300577	5
Deletion	Chr3	14813549	14813550	1
Deletion	Chr9	17513098	17513099	1
Deletion	Chr1	21497526	21497533	7
Deletion	Chr1	21907674	21907685	11
Deletion	Chr1	22240217	22240220	3
Deletion	Chr2	22373786	22373788	2
Deletion	Chr3	26838515	26838516	1
Deletion	Chr1	27780475	27780497	22
Deletion	Chr3	29223241	29223244	3
Deletion	Chr5	29635001	29804000	169000	26

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	34768945	34768945	1
Insertion	Chr8	5256478	5256479	2	LOC_Os08g09050
Insertion	Chr7	26653872	26653876	5
Insertion	Chr7	12108498	12108500	3
Insertion	Chr5	3655158	3655159	2
Insertion	Chr9	19349626	19349626	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	12280856	12304550
Inversion	Chr4	13473553	14192860	LOC_Os04g24730
Inversion	Chr1	18624991	39124991
Inversion	Chr8	20418050	20420872	LOC_Os08g32920

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2171943	Chr7	24487594
Translocation	Chr12	13387014	Chr1	39117102	LOC_Os01g67364
Translocation	Chr4	18466195	Chr3	28970504	LOC_Os03g50740

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