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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35681948	A-G	HET	INTERGENIC
SBS	Chr1	5133426	T-A	HOMO	INTERGENIC
SBS	Chr1	5133429	T-A	HOMO	INTERGENIC
SBS	Chr1	8584822	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g15330
SBS	Chr10	10437264	C-A	HET	INTERGENIC
SBS	Chr11	19977576	A-G	HOMO	INTRON
SBS	Chr12	21015219	G-T	HET	INTERGENIC
SBS	Chr12	23779575	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	24972938	A-T	HOMO	INTERGENIC
SBS	Chr3	11531771	A-C	HOMO	INTRON
SBS	Chr3	23335847	A-T	HET	INTRON
SBS	Chr3	5435466	T-A	HET	INTRON
SBS	Chr4	26677471	G-A	HET	INTERGENIC
SBS	Chr4	27763545	A-C	HET	INTERGENIC
SBS	Chr4	4964691	A-T	HOMO	INTERGENIC
SBS	Chr5	24299754	A-C	HET	INTERGENIC
SBS	Chr5	2473814	T-C	HOMO	INTRON
SBS	Chr6	20565593	G-A	HOMO	INTERGENIC
SBS	Chr6	31199284	G-A	HET	INTERGENIC
SBS	Chr7	3109954	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	5997160	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g10940
SBS	Chr8	435509	C-T	HET	SPLICE_SITE_REGION
SBS	Chr8	6555963	T-C	HOMO	INTRON

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	89001	136000	47000	10
Deletion	Chr1	5062721	5110419	47698	5
Deletion	Chr8	5608120	5608127	7
Deletion	Chr11	5776822	5776830	8
Deletion	Chr1	7057927	7057955	28
Deletion	Chr8	7680001	7857000	177000	31
Deletion	Chr5	8186302	8186310	8
Deletion	Chr10	8935931	8935934	3
Deletion	Chr1	9272716	9272722	6	LOC_Os01g16350
Deletion	Chr7	10309088	10309090	2
Deletion	Chr9	13728261	13728262	1
Deletion	Chr2	17707319	17707323	4	LOC_Os02g29760
Deletion	Chr12	18414001	18577000	163000	23
Deletion	Chr2	19551150	19551158	8
Deletion	Chr9	19785244	19785249	5	LOC_Os09g33550
Deletion	Chr4	20002975	20002976	1
Deletion	Chr9	21838240	21838244	4
Deletion	Chr8	22727070	22727076	6
Deletion	Chr2	23659316	23659318	2
Deletion	Chr7	23966679	23966686	7
Deletion	Chr1	26479746	26479752	6
Deletion	Chr3	27660956	27660973	17
Deletion	Chr5	29650122	29650135	13
Deletion	Chr2	32282472	32282476	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	13340927	13340928	2
Insertion	Chr6	5262880	5262881	2
Insertion	Chr8	22800889	22800889	1

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1475120	Chr9	18649921	LOC_Os11g03760
Translocation	Chr11	4167975	Chr6	21573201
Translocation	Chr11	15952955	Chr7	11854551
Translocation	Chr5	22550102	Chr3	23592964
Translocation	Chr10	23044153	Chr3	32469644
Translocation	Chr3	36162995	Chr2	35845355

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