Search Results

Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2665738	C-A	HET	INTRON
SBS	Chr1	3173454	C-G	HET	INTERGENIC
SBS	Chr1	29344350	G-C	HOMO	INTERGENIC
SBS	Chr1	34579994	C-T	HET	INTERGENIC
SBS	Chr1	34796817	G-A	HET	INTERGENIC
SBS	Chr2	31914272	G-T	HET	INTERGENIC
SBS	Chr4	11429461	A-T	HET	INTRON
SBS	Chr4	14476336	T-C	HOMO	INTERGENIC
SBS	Chr5	3500342	T-C	HET	START_GAINED	LOC_Os05g06720
SBS	Chr5	4209535	A-G	HET	INTERGENIC
SBS	Chr6	2421030	C-T	HET	UTR_3_PRIME
SBS	Chr6	6320742	G-T	HET	INTERGENIC
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr7	6543809	A-G	HOMO	INTERGENIC
SBS	Chr7	27292510	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	4286848	A-G	HOMO	INTERGENIC
SBS	Chr8	5529200	C-T	HOMO	INTERGENIC
SBS	Chr8	25705062	G-A	HET	INTERGENIC
SBS	Chr9	3223636	A-G	HOMO	INTERGENIC
SBS	Chr9	6629215	T-C	HOMO	INTERGENIC
SBS	Chr9	19002045	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g31494
SBS	Chr10	2259276	C-A	HET	INTRON
SBS	Chr10	2274562	C-G	HET	INTERGENIC
SBS	Chr10	7282265	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13480
SBS	Chr10	22150169	A-T	HET	INTERGENIC
SBS	Chr10	22150170	G-T	HET	INTERGENIC
SBS	Chr11	7587452	G-A	HOMO	START_GAINED	LOC_Os11g13800

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2070809	2070814	5	LOC_Os12g04830
Deletion	Chr12	2243194	2243196	2
Deletion	Chr7	3326384	3326385	1
Deletion	Chr3	4480033	4480043	10	LOC_Os03g08690
Deletion	Chr1	5325141	5325145	4
Deletion	Chr10	5875630	5875634	4
Deletion	Chr11	8072410	8072416	6
Deletion	Chr4	9401837	9401838	1
Deletion	Chr3	10420625	10420627	2
Deletion	Chr2	11079146	11079166	20
Deletion	Chr11	11399297	11399309	12
Deletion	Chr10	12235886	12236605	719
Deletion	Chr4	14871483	14871484	1
Deletion	Chr12	17628043	17628051	8
Deletion	Chr8	19736808	19736809	1
Deletion	Chr2	19820317	19820321	4
Deletion	Chr2	20584506	20584513	7
Deletion	Chr3	22130699	22130704	5
Deletion	Chr1	22162964	22162972	8
Deletion	Chr5	25538393	25538396	3
Deletion	Chr6	26128763	26128771	8
Deletion	Chr12	26695193	26695194	1
Deletion	Chr8	26832016	26832017	1
Deletion	Chr6	28100377	28100400	23
Deletion	Chr4	32059790	32059860	70
Deletion	Chr4	34884632	34884641	9	LOC_Os04g58650
Deletion	Chr2	35543115	35543119	4
Deletion	Chr3	36197599	36197600	1
Deletion	Chr1	38765513	38765528	15
Deletion	Chr1	41069594	41069597	3	LOC_Os01g70950

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	311092	311093	2	LOC_Os05g01520
Insertion	Chr12	24620953	24620970	18
Insertion	Chr2	24576638	24576640	3
Insertion	Chr11	27699077	27699078	2
Insertion	Chr3	16708020	16708021	2
Insertion	Chr8	16866911	16866912	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	13599567	13784853	LOC_Os04g23799

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3928702	Chr6	19996896
Translocation	Chr6	5398544	Chr2	17587090	LOC_Os06g10480
Translocation	Chr10	12236596	Chr6	9509547
Translocation	Chr6	13456048	Chr2	16375780	2
Translocation	Chr11	20393604	Chr7	18351882
Translocation	Chr11	21578107	Chr6	9509577
Translocation	Chr11	21578716	Chr10	12235944

Main menu