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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12081194	G-T	HET	INTERGENIC
SBS	Chr10	10249990	C-T	HOMO	INTRON
SBS	Chr10	13544906	G-A	HOMO	INTRON
SBS	Chr10	17561372	A-G	HET	INTERGENIC
SBS	Chr11	22633142	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g38170
SBS	Chr11	23477518	G-A	HET	INTERGENIC
SBS	Chr12	9025398	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g15820
SBS	Chr2	13367828	C-T	HOMO	UTR_5_PRIME
SBS	Chr3	21854500	A-G	HOMO	INTERGENIC
SBS	Chr3	31293888	A-T	HET	INTERGENIC
SBS	Chr4	10451781	A-G	HOMO	INTERGENIC
SBS	Chr5	27048083	G-C	HET	INTRON
SBS	Chr5	5794295	T-C	HET	INTRON
SBS	Chr5	6895677	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g12060
SBS	Chr6	2861001	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g06170
SBS	Chr7	12528460	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	9903469	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16850
SBS	Chr8	17420385	G-A	HET	INTERGENIC
SBS	Chr8	22701182	G-A	HOMO	INTERGENIC
SBS	Chr9	394546	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01550
SBS	Chr9	6926145	C-G	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2926296	2926315	19	LOC_Os07g06030
Deletion	Chr1	4832222	4832227	5
Deletion	Chr3	6094975	6094976	1
Deletion	Chr7	7434008	7434022	14
Deletion	Chr2	8590558	8590560	2	LOC_Os02g15350
Deletion	Chr11	9868253	9868283	30
Deletion	Chr10	10771908	10771913	5
Deletion	Chr12	11848001	11861000	13000	2
Deletion	Chr6	15906545	15906549	4	LOC_Os06g28030
Deletion	Chr12	18596674	18596677	3
Deletion	Chr1	22419028	22419035	7
Deletion	Chr7	23167561	23167565	4
Deletion	Chr4	24910977	24910978	1
Deletion	Chr5	24931001	24955000	24000	5
Deletion	Chr2	24941159	24941160	1	LOC_Os02g41590
Deletion	Chr6	25603001	25624000	21000	4
Deletion	Chr1	28061681	28061683	2
Deletion	Chr1	31168119	31168360	241
Deletion	Chr1	35033001	35055000	22000	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	42730821	42730822	2
Insertion	Chr2	24964446	24964446	1
Insertion	Chr6	24610240	24610241	2
Insertion	Chr7	28354245	28354246	2
Insertion	Chr9	13061771	13061772	2

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	986702	Chr2	32475676	2
Translocation	Chr12	10238338	Chr6	27851559	LOC_Os12g17860

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