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| Mutant Information |
|---|
| Mutant Name | FN980-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN980-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17885919 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 19298148 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g34920 |
| SBS | Chr1 | 24120221 | G-C | HET | INTERGENIC | |
| SBS | Chr1 | 37155972 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g63990 |
| SBS | Chr1 | 42667970 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 42667971 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 42668019 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 42668020 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 5663674 | C-A | HET | INTRON | |
| SBS | Chr10 | 17257839 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 18124939 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 22382792 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 8077406 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 15456713 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 2061828 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g04820 |
| SBS | Chr12 | 5192043 | C-T | HET | INTRON | |
| SBS | Chr3 | 17207189 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 17212414 | A-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 28000086 | C-G | HOMO | INTRON | |
| SBS | Chr3 | 799721 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 799727 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 10431059 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 16059815 | T-A | HOMO | INTRON | |
| SBS | Chr4 | 16059816 | G-T | HOMO | INTRON | |
| SBS | Chr4 | 18452077 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 24814171 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 11521832 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 26904105 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 6090932 | A-T | HOMO | UTR_5_PRIME | |
| SBS | Chr6 | 14280967 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 21193489 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 29634713 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g49480 |
| SBS | Chr7 | 3187676 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 7934434 | C-T | HET | INTRON |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 231617 | 231619 | 2 | |
| Deletion | Chr1 | 547566 | 547572 | 6 | |
| Deletion | Chr4 | 683660 | 683662 | 2 | |
| Deletion | Chr5 | 5382733 | 5382748 | 15 | |
| Deletion | Chr11 | 9220591 | 9220592 | 1 | |
| Deletion | Chr2 | 9655431 | 9655432 | 1 | |
| Deletion | Chr10 | 13251514 | 13251519 | 5 | |
| Deletion | Chr1 | 15312315 | 15312318 | 3 | LOC_Os01g27430 |
| Deletion | Chr11 | 21065791 | 21065792 | 1 | |
| Deletion | Chr11 | 22928008 | 22928009 | 1 | LOC_Os11g38650 |
| Deletion | Chr12 | 24263063 | 24263067 | 4 |
No Insertion
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 25715119 | 26180112 | LOC_Os04g44220 |
| Inversion | Chr1 | 31126055 | 31862832 | 2 |
| Inversion | Chr1 | 31862837 | 32027970 | 2 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 1224005 | Chr1 | 31126066 | 2 |
| Translocation | Chr10 | 1225945 | Chr1 | 32027968 | 2 |
| Translocation | Chr7 | 7040253 | Chr1 | 23344116 | LOC_Os01g41240 |
| Translocation | Chr10 | 11187101 | Chr8 | 25365097 | LOC_Os10g21800 |
| Translocation | Chr10 | 15747690 | Chr4 | 23061386 | |
| Translocation | Chr10 | 15748543 | Chr4 | 23061386 | |
| Translocation | Chr4 | 27746230 | Chr3 | 16831601 |