Search Nipponbare

Mutant Information

Mutant Name	FN981-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN981-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39925836	A-G	HET	UTR_3_PRIME
SBS	Chr10	9237640	A-C	HET	INTERGENIC
SBS	Chr12	5505792	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	3080203	A-T	HOMO	INTERGENIC
SBS	Chr2	824899	T-C	HOMO	UTR_3_PRIME
SBS	Chr2	9457764	G-T	HOMO	INTERGENIC
SBS	Chr3	14476876	G-C	HOMO	INTERGENIC
SBS	Chr3	2023296	A-G	HET	INTERGENIC
SBS	Chr3	2131463	T-G	HET	INTERGENIC
SBS	Chr3	2886797	T-C	HET	INTRON
SBS	Chr3	5973607	A-G	HET	UTR_3_PRIME
SBS	Chr6	13104872	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	15326677	T-A	HET	INTERGENIC
SBS	Chr6	21284823	G-A	HET	INTERGENIC
SBS	Chr7	23860160	A-T	HET	INTERGENIC
SBS	Chr8	12332270	A-T	HET	INTRON
SBS	Chr8	26264972	T-G	HOMO	INTRON
SBS	Chr8	26292483	C-T	HOMO	INTRON
SBS	Chr9	8676080	G-T	HET	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1660892	1660900	8
Deletion	Chr11	8456344	8456345	1
Deletion	Chr6	8675931	8675962	31
Deletion	Chr11	9118481	9121623	3142
Deletion	Chr9	12444413	12444416	3
Deletion	Chr3	13064345	13064347	2
Deletion	Chr6	16124192	16124199	7
Deletion	Chr4	16962463	16962471	8
Deletion	Chr4	17335102	17335119	17	LOC_Os04g29224
Deletion	Chr4	17336337	17336350	13
Deletion	Chr1	20575678	20575688	10	LOC_Os01g36920
Deletion	Chr5	28675704	28675705	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26760959	26760959	1
Insertion	Chr6	26153097	26153099	3
Insertion	Chr7	14068988	14068989	2	LOC_Os07g24740
Insertion	Chr7	1575276	1575277	2
Insertion	Chr9	15014805	15014808	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1919998	19701717	LOC_Os11g33310
Inversion	Chr5	12771383	13708712	LOC_Os05g22490
Inversion	Chr5	12771480	13708771	LOC_Os05g22490

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	651938	Chr3	12610996
Translocation	Chr12	655463	Chr3	12610953
Translocation	Chr12	1644146	Chr6	19265046	LOC_Os06g33090
Translocation	Chr9	1877783	Chr2	13467146
Translocation	Chr9	7174117	Chr1	18624988
Translocation	Chr7	7972192	Chr6	13713970	LOC_Os06g23504
Translocation	Chr12	13386894	Chr10	15370823	LOC_Os10g29570
Translocation	Chr12	25499860	Chr7	3439968	2
Translocation	Chr12	26538755	Chr6	14068407	LOC_Os12g42710
Translocation	Chr3	26887217	Chr1	2387028	2