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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1639507	A-G	HET	INTERGENIC
SBS	Chr1	17092285	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g31250
SBS	Chr1	19748194	G-A	HET	INTERGENIC
SBS	Chr1	27192841	C-T	HET	INTERGENIC
SBS	Chr1	36395870	C-G	HOMO	UTR_5_PRIME
SBS	Chr1	36414279	A-T	HOMO	INTRON
SBS	Chr3	719845	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g02160
SBS	Chr3	2660513	A-T	HOMO	INTRON
SBS	Chr3	8173674	T-C	HET	SYNONYMOUS_CODING
SBS	Chr3	10396214	G-A	HET	INTERGENIC
SBS	Chr3	11987576	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g21070
SBS	Chr3	15491938	A-G	HET	INTERGENIC
SBS	Chr3	16325271	T-A	HET	INTERGENIC
SBS	Chr4	2903469	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05680
SBS	Chr4	7521408	T-G	HET	INTERGENIC
SBS	Chr4	11097246	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19900
SBS	Chr4	12464231	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22010
SBS	Chr4	17676636	G-A	HOMO	INTERGENIC
SBS	Chr4	29586993	G-T	HET	INTERGENIC
SBS	Chr5	4250240	T-C	HET	UTR_5_PRIME
SBS	Chr5	9914183	G-A	HOMO	INTERGENIC
SBS	Chr6	24747460	C-A	HET	INTERGENIC
SBS	Chr7	18797515	G-A	HET	INTERGENIC
SBS	Chr7	27350841	G-A	HET	INTRON
SBS	Chr7	29205672	A-T	HET	INTERGENIC
SBS	Chr8	6040193	A-G	HET	INTERGENIC
SBS	Chr8	22421665	T-G	HET	INTERGENIC
SBS	Chr8	24891562	C-T	HET	UTR_3_PRIME
SBS	Chr8	26277771	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g41610
SBS	Chr9	7767262	T-G	HOMO	INTERGENIC
SBS	Chr9	18308614	A-G	HET	INTRON
SBS	Chr10	7438335	C-A	HOMO	UTR_3_PRIME
SBS	Chr10	12714023	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24720
SBS	Chr10	14546323	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g28030
SBS	Chr12	292235	T-C	HET	INTERGENIC
SBS	Chr12	3697022	A-T	HET	INTRON
SBS	Chr12	15837213	A-G	HET	INTERGENIC
SBS	Chr12	22424130	G-A	HOMO	INTRON

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	29340	29341	1
Deletion	Chr8	757574	757585	11
Deletion	Chr1	1564742	1564744	2	LOC_Os01g03740
Deletion	Chr7	3374135	3374136	1	LOC_Os07g06900
Deletion	Chr12	3696975	3696989	14
Deletion	Chr9	3739095	3739104	9
Deletion	Chr5	6160878	6160882	4
Deletion	Chr8	6339553	6339580	27	LOC_Os08g10780
Deletion	Chr10	7633688	7633701	13
Deletion	Chr10	9827590	9827700	110
Deletion	Chr7	11145734	11145735	1
Deletion	Chr10	13174971	13174976	5
Deletion	Chr2	14083025	14083030	5	LOC_Os02g24280
Deletion	Chr12	14157226	14157239	13
Deletion	Chr1	16314073	16314439	366
Deletion	Chr9	16516142	16516149	7	LOC_Os09g27160
Deletion	Chr4	16819263	16819264	1
Deletion	Chr2	18623280	18623285	5
Deletion	Chr11	18810310	18810311	1
Deletion	Chr3	19100379	19100391	12
Deletion	Chr8	20354493	20354497	4
Deletion	Chr12	22424109	22424153	44
Deletion	Chr8	25318128	25318135	7	LOC_Os08g39950
Deletion	Chr6	26421889	26421891	2	LOC_Os06g43870
Deletion	Chr3	26912341	26912342	1
Deletion	Chr6	28505141	28505142	1
Deletion	Chr4	30469606	30469608	2
Deletion	Chr3	31158543	31158552	9	LOC_Os03g54804
Deletion	Chr2	33203768	33203770	2
Deletion	Chr4	33214563	33214569	6	LOC_Os04g55790
Deletion	Chr1	37159245	37159249	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	24760679	24760680	2
Insertion	Chr8	11287759	11287759	1
Insertion	Chr8	26060431	26060431	1
Insertion	Chr11	6004294	6004294	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3340280	Chr3	2873109	2
Translocation	Chr8	3342397	Chr3	2873107	LOC_Os03g05760

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