Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16815618	C-G	HET	INTERGENIC
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr1	5465178	C-T	HET	INTRON
SBS	Chr10	19311610	T-C	HOMO	INTRON
SBS	Chr11	11607269	G-T	HET	INTERGENIC
SBS	Chr11	19302439	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g32690
SBS	Chr11	19895181	C-G	HET	INTERGENIC
SBS	Chr12	25917576	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g41840
SBS	Chr12	2981734	T-A	HOMO	INTERGENIC
SBS	Chr2	14569803	T-G	HET	SYNONYMOUS_CODING
SBS	Chr2	30008590	T-C	HOMO	INTERGENIC
SBS	Chr2	5968899	A-T	HET	INTERGENIC
SBS	Chr3	14736874	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g25750
SBS	Chr3	15544095	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27150
SBS	Chr3	17954274	G-T	HET	INTERGENIC
SBS	Chr4	16886263	C-T	HET	INTRON
SBS	Chr5	10338918	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17990
SBS	Chr6	15499105	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g27370
SBS	Chr6	3720664	G-A	HOMO	INTERGENIC
SBS	Chr7	5975317	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g10910
SBS	Chr8	10831230	C-T	HOMO	INTERGENIC
SBS	Chr8	20310050	T-G	HET	INTERGENIC
SBS	Chr8	27746761	C-T	HOMO	INTERGENIC
SBS	Chr8	4364414	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g07790
SBS	Chr9	2208603	T-C	HOMO	INTRON
SBS	Chr9	8002793	G-T	HOMO	INTERGENIC
SBS	Chr9	8002794	T-C	HOMO	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	528264	528279	15	LOC_Os12g01900
Deletion	Chr12	2087251	2087255	4
Deletion	Chr6	4331327	4331328	1
Deletion	Chr2	4728396	4728400	4
Deletion	Chr5	5229337	5229340	3
Deletion	Chr2	5786640	5786652	12	LOC_Os02g10900
Deletion	Chr11	8299205	8299206	1
Deletion	Chr1	10454062	10454063	1
Deletion	Chr1	10456540	10464359	7819	LOC_Os01g18570
Deletion	Chr6	14213681	14213682	1
Deletion	Chr7	16033247	16033251	4	LOC_Os07g27490
Deletion	Chr7	17143056	17143074	18
Deletion	Chr9	17644842	17644846	4
Deletion	Chr2	20131001	20330000	199000	26
Deletion	Chr8	20819409	20819426	17
Deletion	Chr3	22534904	22534915	11
Deletion	Chr3	24521102	24521112	10
Deletion	Chr8	25675876	25675885	9	LOC_Os08g40555
Deletion	Chr8	25871431	25871432	1	LOC_Os08g40900
Deletion	Chr4	27083569	27083578	9
Deletion	Chr3	36031200	36031221	21

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	2578679	2578679	1
Insertion	Chr6	23644970	23644990	21

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14257481	15912887	LOC_Os03g24980
Inversion	Chr2	20033013	20130483
Inversion	Chr1	21537127	21614757	LOC_Os01g38359

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	12046061	Chr4	16367934
Translocation	Chr10	15898221	Chr3	15309047	2
Translocation	Chr10	15901237	Chr3	15912899	LOC_Os10g30560
Translocation	Chr4	16367928	Chr3	17411372	LOC_Os03g30519
Translocation	Chr4	16367929	Chr3	25925756
Translocation	Chr4	16367930	Chr1	10682382
Translocation	Chr11	18635494	Chr4	16367933
Translocation	Chr11	20190259	Chr4	16367962
Translocation	Chr7	25681261	Chr4	16367929	LOC_Os07g42895

Main menu