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Mutant Information

Mutant NameFN984-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN984-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 31
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr111458261A-CHETINTERGENIC
SBSChr118348340T-AHOMOINTERGENIC
SBSChr127786064C-THETSYNONYMOUS_CODING
SBSChr13635653A-THOMOINTRON
SBSChr1012553367C-AHETSTOP_GAINEDLOC_Os10g24460
SBSChr1018255443C-THOMOINTERGENIC
SBSChr109136423A-THETINTERGENIC
SBSChr1119077148C-AHETINTRON
SBSChr1210100181G-CHETINTRON
SBSChr211172787G-AHETINTERGENIC
SBSChr216263122G-AHETUTR_3_PRIME
SBSChr221114059C-THOMOINTRON
SBSChr221405002G-THOMOINTERGENIC
SBSChr221886921G-THOMONON_SYNONYMOUS_CODINGLOC_Os02g36264
SBSChr223011169G-THETINTERGENIC
SBSChr225904879A-THOMOINTERGENIC
SBSChr24837346T-GHETINTERGENIC
SBSChr328216393C-THETINTERGENIC
SBSChr38574992G-CHOMOINTRON
SBSChr410934008G-AHETINTRON
SBSChr415993057A-THETINTERGENIC
SBSChr416412181C-THETINTERGENIC
SBSChr43135844G-AHETINTERGENIC
SBSChr48113353C-THETINTERGENIC
SBSChr611648892C-THETINTERGENIC
SBSChr624469633A-GHETNON_SYNONYMOUS_CODINGLOC_Os06g40980
SBSChr66988726A-THETINTERGENIC
SBSChr71216803A-THETINTRON
SBSChr77090267C-THETINTERGENIC
SBSChr83077566A-CHOMOINTERGENIC
SBSChr911658711A-GHOMOINTERGENIC

Deletions: 24
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr5145953614595393
DeletionChr102498758249877719
DeletionChr10388175438817584
DeletionChr74611430461144717
DeletionChr12687047468704817
DeletionChr1735014473501517
DeletionChr386077128608627915LOC_Os03g15600
DeletionChr313020345130203549
DeletionChr413394832133948331
DeletionChr914163962141639631
DeletionChr514516216145162193
DeletionChr4152983751529839520LOC_Os04g26240
DeletionChr815776713157767196
DeletionChr815805309158053178
DeletionChr118156591181565954
DeletionChr4186428151864286550
DeletionChr719026030190260322
DeletionChr92025626920256423154
DeletionChr120308726203087315LOC_Os01g36590
DeletionChr422004239220042456
DeletionChr722170222221702231
DeletionChr422319899223199012
DeletionChr823282745232827472
DeletionChr129295313292967311418LOC_Os01g50980

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr10433395743339582
InsertionChr620642999206430002

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr179177617917890
InversionChr213943808141174982
InversionChr621200076212233132
InversionChr62122337021923718LOC_Os06g36240

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr97257113Chr621200094LOC_Os06g36190
TranslocationChr1110672624Chr8109891662
TranslocationChr920256421Chr816133994
TranslocationChr920256424Chr816133997
TranslocationChr1125735293Chr2141175422
TranslocationChr434006298Chr318216873LOC_Os03g31839