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Mutant Information |
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Mutant Name | FN984-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN984-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 31
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 11458261 | A-C | HET | INTERGENIC | |
SBS | Chr1 | 18348340 | T-A | HOMO | INTERGENIC | |
SBS | Chr1 | 27786064 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr1 | 3635653 | A-T | HOMO | INTRON | |
SBS | Chr10 | 12553367 | C-A | HET | STOP_GAINED | LOC_Os10g24460 |
SBS | Chr10 | 18255443 | C-T | HOMO | INTERGENIC | |
SBS | Chr10 | 9136423 | A-T | HET | INTERGENIC | |
SBS | Chr11 | 19077148 | C-A | HET | INTRON | |
SBS | Chr12 | 10100181 | G-C | HET | INTRON | |
SBS | Chr2 | 11172787 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 16263122 | G-A | HET | UTR_3_PRIME | |
SBS | Chr2 | 21114059 | C-T | HOMO | INTRON | |
SBS | Chr2 | 21405002 | G-T | HOMO | INTERGENIC | |
SBS | Chr2 | 21886921 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g36264 |
SBS | Chr2 | 23011169 | G-T | HET | INTERGENIC | |
SBS | Chr2 | 25904879 | A-T | HOMO | INTERGENIC | |
SBS | Chr2 | 4837346 | T-G | HET | INTERGENIC | |
SBS | Chr3 | 28216393 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 8574992 | G-C | HOMO | INTRON | |
SBS | Chr4 | 10934008 | G-A | HET | INTRON | |
SBS | Chr4 | 15993057 | A-T | HET | INTERGENIC | |
SBS | Chr4 | 16412181 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 3135844 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 8113353 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 11648892 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 24469633 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g40980 |
SBS | Chr6 | 6988726 | A-T | HET | INTERGENIC | |
SBS | Chr7 | 1216803 | A-T | HET | INTRON | |
SBS | Chr7 | 7090267 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 3077566 | A-C | HOMO | INTERGENIC | |
SBS | Chr9 | 11658711 | A-G | HOMO | INTERGENIC |
Deletions: 24
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 1459536 | 1459539 | 3 | |
Deletion | Chr10 | 2498758 | 2498777 | 19 | |
Deletion | Chr10 | 3881754 | 3881758 | 4 | |
Deletion | Chr7 | 4611430 | 4611447 | 17 | |
Deletion | Chr12 | 6870474 | 6870481 | 7 | |
Deletion | Chr1 | 7350144 | 7350151 | 7 | |
Deletion | Chr3 | 8607712 | 8608627 | 915 | LOC_Os03g15600 |
Deletion | Chr3 | 13020345 | 13020354 | 9 | |
Deletion | Chr4 | 13394832 | 13394833 | 1 | |
Deletion | Chr9 | 14163962 | 14163963 | 1 | |
Deletion | Chr5 | 14516216 | 14516219 | 3 | |
Deletion | Chr4 | 15298375 | 15298395 | 20 | LOC_Os04g26240 |
Deletion | Chr8 | 15776713 | 15776719 | 6 | |
Deletion | Chr8 | 15805309 | 15805317 | 8 | |
Deletion | Chr1 | 18156591 | 18156595 | 4 | |
Deletion | Chr4 | 18642815 | 18642865 | 50 | |
Deletion | Chr7 | 19026030 | 19026032 | 2 | |
Deletion | Chr9 | 20256269 | 20256423 | 154 | |
Deletion | Chr1 | 20308726 | 20308731 | 5 | LOC_Os01g36590 |
Deletion | Chr4 | 22004239 | 22004245 | 6 | |
Deletion | Chr7 | 22170222 | 22170223 | 1 | |
Deletion | Chr4 | 22319899 | 22319901 | 2 | |
Deletion | Chr8 | 23282745 | 23282747 | 2 | |
Deletion | Chr1 | 29295313 | 29296731 | 1418 | LOC_Os01g50980 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 4333957 | 4333958 | 2 | |
Insertion | Chr6 | 20642999 | 20643000 | 2 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 7917761 | 7917890 | |
Inversion | Chr2 | 13943808 | 14117498 | 2 |
Inversion | Chr6 | 21200076 | 21223313 | 2 |
Inversion | Chr6 | 21223370 | 21923718 | LOC_Os06g36240 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 7257113 | Chr6 | 21200094 | LOC_Os06g36190 |
Translocation | Chr11 | 10672624 | Chr8 | 10989166 | 2 |
Translocation | Chr9 | 20256421 | Chr8 | 16133994 | |
Translocation | Chr9 | 20256424 | Chr8 | 16133997 | |
Translocation | Chr11 | 25735293 | Chr2 | 14117542 | 2 |
Translocation | Chr4 | 34006298 | Chr3 | 18216873 | LOC_Os03g31839 |