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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15664392	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g28010
SBS	Chr1	18124957	C-G	HET	UTR_5_PRIME
SBS	Chr1	24292437	C-T	HET	INTERGENIC
SBS	Chr1	3544382	T-A	HET	INTERGENIC
SBS	Chr1	4027355	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g08250
SBS	Chr10	10688553	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g21080
SBS	Chr10	12317162	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24040
SBS	Chr10	1628778	C-T	HET	INTRON
SBS	Chr11	21126980	A-G	HET	INTERGENIC
SBS	Chr11	24118545	A-T	HOMO	INTERGENIC
SBS	Chr11	29004369	A-G	HET	INTERGENIC
SBS	Chr11	6380759	A-T	HOMO	INTERGENIC
SBS	Chr12	17956894	T-C	HET	INTRON
SBS	Chr2	25580698	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g42550
SBS	Chr2	25580699	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	26835800	T-C	HOMO	INTERGENIC
SBS	Chr3	24111152	C-T	HET	UTR_3_PRIME
SBS	Chr3	7129959	C-T	HOMO	INTRON
SBS	Chr4	13025651	G-A	HET	INTERGENIC
SBS	Chr4	28209543	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g47560
SBS	Chr4	4086248	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07670
SBS	Chr5	17991836	A-G	HOMO	INTERGENIC
SBS	Chr5	19311969	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g32960
SBS	Chr5	21612282	A-T	HET	INTERGENIC
SBS	Chr6	10781352	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g18960
SBS	Chr6	9565965	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	17080193	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g29170
SBS	Chr7	28885059	C-T	HET	INTRON
SBS	Chr7	4634002	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	7399680	T-A	HET	INTERGENIC
SBS	Chr7	8003880	G-A	HET	INTERGENIC
SBS	Chr8	20587724	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33130
SBS	Chr8	7561703	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g12760

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	708717	708718	1
Deletion	Chr1	2310351	2310354	3
Deletion	Chr12	9822455	9822456	1	LOC_Os12g17160
Deletion	Chr2	10529369	10529375	6
Deletion	Chr5	10882141	10882143	2
Deletion	Chr6	11991929	11991934	5
Deletion	Chr5	15932677	15932685	8
Deletion	Chr4	21976310	21976318	8
Deletion	Chr2	23216557	23216558	1
Deletion	Chr4	24197622	24205887	8265	2
Deletion	Chr4	25729313	25729363	50	LOC_Os04g43490
Deletion	Chr6	28621795	28621802	7
Deletion	Chr2	32598342	32598343	1
Deletion	Chr3	34167356	34167363	7	LOC_Os03g60080

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	14246220	14246221	2
Insertion	Chr9	1716835	1716837	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	20827441	21187268	LOC_Os07g35430
Inversion	Chr1	38241691	38614490

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	9894530	Chr1	23525404
Translocation	Chr5	10074961	Chr4	29063817
Translocation	Chr10	17213156	Chr6	27934740	LOC_Os06g46070
Translocation	Chr7	20827453	Chr6	29844416
Translocation	Chr9	20883365	Chr4	17888291	LOC_Os04g29990
Translocation	Chr7	22069261	Chr6	25276921	LOC_Os07g36830
Translocation	Chr11	28407010	Chr7	15855152

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