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Mutant Information |
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Mutant Name | FN986-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN986-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 21
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 19942176 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g36040 |
SBS | Chr1 | 28962461 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 3653129 | C-A | HET | INTERGENIC | |
SBS | Chr2 | 20157162 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 26541139 | A-G | HET | INTERGENIC | |
SBS | Chr3 | 27282006 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g47980 |
SBS | Chr4 | 24710724 | C-G | HOMO | INTERGENIC | |
SBS | Chr4 | 29644668 | C-A | HOMO | INTERGENIC | |
SBS | Chr5 | 3579783 | C-T | HOMO | INTERGENIC | |
SBS | Chr5 | 4409353 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 17254217 | T-C | HET | INTERGENIC | |
SBS | Chr6 | 2696771 | C-A | HET | INTRON | |
SBS | Chr6 | 6340250 | C-T | HOMO | INTERGENIC | |
SBS | Chr7 | 4949286 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 11261915 | G-A | HET | INTRON | |
SBS | Chr8 | 7649209 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 12967636 | C-G | HET | INTERGENIC | |
SBS | Chr9 | 2482783 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g04660 |
SBS | Chr10 | 2561649 | C-T | HET | INTRON | |
SBS | Chr10 | 3792632 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 13671394 | C-T | HET | INTERGENIC |
Deletions: 23
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 4604189 | 4604196 | 7 | LOC_Os08g08110 |
Deletion | Chr3 | 5737950 | 5737960 | 10 | |
Deletion | Chr5 | 6497189 | 6497190 | 1 | |
Deletion | Chr11 | 7776693 | 7776709 | 16 | LOC_Os11g14010 |
Deletion | Chr10 | 8011242 | 8011256 | 14 | |
Deletion | Chr4 | 9404239 | 9404242 | 3 | |
Deletion | Chr11 | 9746461 | 9746462 | 1 | |
Deletion | Chr8 | 11082990 | 11082992 | 2 | |
Deletion | Chr9 | 12628881 | 12628887 | 6 | |
Deletion | Chr7 | 12753640 | 12753651 | 11 | |
Deletion | Chr8 | 12827388 | 12827396 | 8 | |
Deletion | Chr8 | 14172713 | 14172718 | 5 | |
Deletion | Chr1 | 15418927 | 15418934 | 7 | LOC_Os01g27650 |
Deletion | Chr11 | 18411769 | 18411770 | 1 | LOC_Os11g31500 |
Deletion | Chr1 | 19581323 | 19581324 | 1 | |
Deletion | Chr9 | 20844017 | 20844023 | 6 | LOC_Os09g36170 |
Deletion | Chr11 | 22393428 | 22393433 | 5 | |
Deletion | Chr8 | 23054942 | 23054949 | 7 | LOC_Os08g36500 |
Deletion | Chr2 | 26233282 | 26233286 | 4 | LOC_Os02g43460 |
Deletion | Chr5 | 26815117 | 26815127 | 10 | |
Deletion | Chr1 | 27241049 | 27241057 | 8 | LOC_Os01g47610 |
Deletion | Chr8 | 27625588 | 27625590 | 2 | |
Deletion | Chr1 | 29740214 | 29740222 | 8 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 20273415 | 20273416 | 2 | |
Insertion | Chr2 | 24235268 | 24235278 | 11 | |
Insertion | Chr11 | 28676529 | 28676531 | 3 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 22061231 | 22345877 | 2 |
Inversion | Chr8 | 22061245 | 22345881 | 2 |
Inversion | Chr1 | 29814892 | 34448233 | LOC_Os01g59570 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 8036706 | Chr8 | 8916568 | LOC_Os11g14320 |
Translocation | Chr4 | 9394936 | Chr2 | 26973812 | |
Translocation | Chr12 | 14304724 | Chr3 | 25971296 | |
Translocation | Chr12 | 14305766 | Chr3 | 25971259 | |
Translocation | Chr5 | 20408014 | Chr2 | 18029719 | |
Translocation | Chr3 | 32459731 | Chr1 | 35462536 |