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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19942176	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36040
SBS	Chr1	28962461	C-T	HOMO	INTERGENIC
SBS	Chr10	2561649	C-T	HET	INTRON
SBS	Chr10	3792632	C-A	HET	INTERGENIC
SBS	Chr11	13671394	C-T	HET	INTERGENIC
SBS	Chr2	20157162	G-A	HET	INTERGENIC
SBS	Chr2	3653129	C-A	HET	INTERGENIC
SBS	Chr3	26541139	A-G	HET	INTERGENIC
SBS	Chr3	27282006	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47980
SBS	Chr4	24710724	C-G	HOMO	INTERGENIC
SBS	Chr4	29644668	C-A	HOMO	INTERGENIC
SBS	Chr5	17254217	T-C	HET	INTERGENIC
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr5	4409353	C-T	HET	INTERGENIC
SBS	Chr6	2696771	C-A	HET	INTRON
SBS	Chr6	6340250	C-T	HOMO	INTERGENIC
SBS	Chr7	11261915	G-A	HET	INTRON
SBS	Chr7	4949286	C-T	HET	INTERGENIC
SBS	Chr8	12967636	C-G	HET	INTERGENIC
SBS	Chr8	7649209	C-T	HET	INTERGENIC
SBS	Chr9	2482783	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04660

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	4604189	4604196	7	LOC_Os08g08110
Deletion	Chr3	5737950	5737960	10
Deletion	Chr5	6497189	6497190	1
Deletion	Chr11	7776693	7776709	16	LOC_Os11g14010
Deletion	Chr10	8011242	8011256	14
Deletion	Chr4	9404239	9404242	3
Deletion	Chr11	9746461	9746462	1
Deletion	Chr8	11082990	11082992	2
Deletion	Chr9	12628881	12628887	6
Deletion	Chr7	12753640	12753651	11
Deletion	Chr8	12827388	12827396	8
Deletion	Chr8	14172713	14172718	5
Deletion	Chr1	15418927	15418934	7	LOC_Os01g27650
Deletion	Chr11	18411769	18411770	1	LOC_Os11g31500
Deletion	Chr1	19581323	19581324	1
Deletion	Chr9	20844017	20844023	6	LOC_Os09g36170
Deletion	Chr11	22393428	22393433	5
Deletion	Chr8	23054942	23054949	7	LOC_Os08g36500
Deletion	Chr2	26233282	26233286	4	LOC_Os02g43460
Deletion	Chr5	26815117	26815127	10
Deletion	Chr1	27241049	27241057	8	LOC_Os01g47610
Deletion	Chr8	27625588	27625590	2
Deletion	Chr1	29740214	29740222	8

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	28676529	28676531	3
Insertion	Chr12	20273415	20273416	2
Insertion	Chr2	24235268	24235278	11

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	22061231	22345877	2
Inversion	Chr8	22061245	22345881	2
Inversion	Chr1	29814892	34448233	LOC_Os01g59570

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8036706	Chr8	8916568	LOC_Os11g14320
Translocation	Chr4	9394936	Chr2	26973812
Translocation	Chr12	14304724	Chr3	25971296
Translocation	Chr12	14305766	Chr3	25971259
Translocation	Chr5	20408014	Chr2	18029719
Translocation	Chr3	32459731	Chr1	35462536

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