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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19480397	G-A	HOMO	INTERGENIC
SBS	Chr1	26643352	A-C	HET	INTERGENIC
SBS	Chr1	32367118	A-T	HET	INTERGENIC
SBS	Chr1	33258013	A-T	HET	INTERGENIC
SBS	Chr1	41778245	T-C	HET	INTERGENIC
SBS	Chr3	21041047	G-A	HOMO	INTERGENIC
SBS	Chr3	26163404	G-A	HOMO	INTERGENIC
SBS	Chr4	1931176	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04160
SBS	Chr4	22956885	A-G	HET	INTRON
SBS	Chr4	26353955	T-C	HET	INTERGENIC
SBS	Chr5	13501138	C-T	HET	INTERGENIC
SBS	Chr6	1588033	G-A	HET	INTERGENIC
SBS	Chr6	26720054	G-A	HET	INTERGENIC
SBS	Chr6	26720055	G-A	HET	INTERGENIC
SBS	Chr6	26720056	G-A	HET	INTERGENIC
SBS	Chr7	1079060	G-A	HET	INTERGENIC
SBS	Chr7	20614880	C-A	HOMO	INTERGENIC
SBS	Chr7	29371334	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g49050
SBS	Chr8	1524818	A-G	HET	INTERGENIC
SBS	Chr8	27936620	A-T	HET	INTERGENIC
SBS	Chr11	8471526	C-T	HOMO	INTERGENIC
SBS	Chr11	13711849	G-A	HET	INTERGENIC
SBS	Chr11	26999539	C-T	HET	INTERGENIC
SBS	Chr12	11468824	T-G	HOMO	UTR_3_PRIME
SBS	Chr12	15510317	T-A	HET	INTRON

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2324674	2324675	1
Deletion	Chr5	3498782	3498808	26
Deletion	Chr1	13239305	13239320	15
Deletion	Chr9	13762162	13762163	1
Deletion	Chr11	15504954	15504955	1
Deletion	Chr9	16116159	16116161	2
Deletion	Chr8	19360854	19360855	1
Deletion	Chr3	20439575	20439577	2
Deletion	Chr11	20508986	20508989	3
Deletion	Chr2	23262910	23266110	3200	LOC_Os02g38480
Deletion	Chr12	24848793	24848794	1
Deletion	Chr6	24915674	24915675	1
Deletion	Chr6	25391389	25391390	1
Deletion	Chr1	25514402	25514409	7	LOC_Os01g44970
Deletion	Chr3	25831220	25841533	10313	2
Deletion	Chr8	26513550	26513557	7
Deletion	Chr3	27107836	27107844	8
Deletion	Chr8	27883292	27883328	36

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	21686825	21686825	1
Insertion	Chr2	17850754	17850755	2
Insertion	Chr7	29629256	29629257	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5970693	6014868
Inversion	Chr9	5970705	6014866

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	357544	Chr6	18214730	LOC_Os12g01590
Translocation	Chr12	7118838	Chr4	5725831
Translocation	Chr9	11597067	Chr6	10213548	LOC_Os06g17600
Translocation	Chr10	13428418	Chr8	19392277	2
Translocation	Chr9	13579816	Chr4	32800021
Translocation	Chr3	34805467	Chr1	17588522	LOC_Os03g61290

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