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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31793382	C-T	HOMO	INTERGENIC
SBS	Chr10	3795220	C-T	HET	INTRON
SBS	Chr10	6386270	C-A	HET	INTERGENIC
SBS	Chr10	9009080	C-T	HET	INTRON
SBS	Chr10	9439302	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g18610
SBS	Chr11	10788372	G-A	HET	UTR_3_PRIME
SBS	Chr11	1117111	T-C	HOMO	INTERGENIC
SBS	Chr11	16278238	A-C	HET	INTRON
SBS	Chr11	3239532	G-A	HOMO	INTERGENIC
SBS	Chr11	858108	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g02670
SBS	Chr12	14970991	G-A	HOMO	INTERGENIC
SBS	Chr12	25154838	C-T	HOMO	INTERGENIC
SBS	Chr2	15905236	T-C	HET	INTERGENIC
SBS	Chr3	13142244	G-A	HOMO	INTERGENIC
SBS	Chr3	17283786	G-A	HOMO	INTERGENIC
SBS	Chr3	20219668	A-T	HET	INTERGENIC
SBS	Chr3	20860137	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g37610
SBS	Chr3	33737583	A-C	HET	UTR_3_PRIME
SBS	Chr4	3428994	C-T	HET	INTERGENIC
SBS	Chr4	34499168	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	3409515	G-A	HET	INTRON
SBS	Chr5	5938596	T-C	HET	INTERGENIC
SBS	Chr6	15122953	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	29734598	A-T	HET	INTRON
SBS	Chr6	9888221	C-T	HOMO	INTERGENIC
SBS	Chr7	11956924	G-C	HET	INTRON
SBS	Chr7	14221291	C-T	HET	INTERGENIC
SBS	Chr7	1482243	T-G	HET	INTERGENIC
SBS	Chr7	3318746	T-G	HET	INTERGENIC
SBS	Chr7	5140231	T-A	HET	INTERGENIC
SBS	Chr7	9797660	T-G	HET	INTERGENIC
SBS	Chr8	21826438	C-T	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	429361	429362	1
Deletion	Chr11	2374950	2374955	5
Deletion	Chr10	2822075	2822077	2
Deletion	Chr12	3413008	3413012	4	LOC_Os12g06980
Deletion	Chr5	4075204	4075205	1
Deletion	Chr5	4086730	4086734	4
Deletion	Chr2	5655970	5655971	1
Deletion	Chr11	7388305	7388323	18
Deletion	Chr3	8221503	8221505	2
Deletion	Chr3	8809341	8809352	11
Deletion	Chr2	9042718	9042719	1
Deletion	Chr8	10171093	10171095	2
Deletion	Chr7	11686711	11686720	9
Deletion	Chr2	12977268	12977270	2
Deletion	Chr2	13418754	13418769	15	LOC_Os02g22480
Deletion	Chr9	13484195	13484211	16	LOC_Os09g22320
Deletion	Chr2	14211616	14211618	2	LOC_Os02g24520
Deletion	Chr3	15601667	15613720	12053	LOC_Os03g27230
Deletion	Chr12	17576085	17576086	1	LOC_Os12g29520
Deletion	Chr3	17782067	17782083	16	LOC_Os03g31230
Deletion	Chr12	19992895	19992896	1
Deletion	Chr3	25102695	25102698	3	LOC_Os03g44580
Deletion	Chr5	26782413	26782415	2
Deletion	Chr3	27492414	27492427	13
Deletion	Chr3	33271183	33271188	5
Deletion	Chr1	34351631	34351639	8	LOC_Os01g59400

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	21372441	21372442	2
Insertion	Chr6	14986975	14986986	12
Insertion	Chr6	22502905	22502906	2
Insertion	Chr7	16271889	16271889	1
Insertion	Chr7	22935759	22935759	1	LOC_Os07g38250
Insertion	Chr7	29563869	29563872	4

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3898322	Chr3	28664748	LOC_Os03g50290
Translocation	Chr11	13396983	Chr2	2470221
Translocation	Chr12	23986652	Chr10	165154

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