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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10590522	G-T	HET	INTERGENIC
SBS	Chr1	15619941	A-T	HET	INTRON
SBS	Chr1	21742558	C-T	HOMO	INTRON
SBS	Chr1	32952566	T-A	HET	INTERGENIC
SBS	Chr1	36224756	T-C	HET	INTRON
SBS	Chr1	38693008	A-T	HET	INTERGENIC
SBS	Chr10	14830088	G-A	HET	INTERGENIC
SBS	Chr11	10845900	C-T	HOMO	INTRON
SBS	Chr11	10905832	G-A	HET	INTERGENIC
SBS	Chr11	2097945	A-T	HOMO	INTRON
SBS	Chr11	2780423	A-G	HET	INTRON
SBS	Chr11	9735594	C-T	HET	INTERGENIC
SBS	Chr12	15156875	G-A	HET	INTERGENIC
SBS	Chr2	2643871	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g05480
SBS	Chr2	4776663	A-G	HET	INTERGENIC
SBS	Chr3	20053998	C-T	HET	INTRON
SBS	Chr3	29369168	T-C	HOMO	INTERGENIC
SBS	Chr3	36204771	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g64070
SBS	Chr4	34822395	T-A	HET	INTRON
SBS	Chr5	12270422	C-A	HOMO	INTERGENIC
SBS	Chr5	13951032	A-T	HOMO	INTRON
SBS	Chr5	25499498	C-T	HET	INTRON
SBS	Chr5	26013541	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44740
SBS	Chr6	9384702	T-C	HET	INTERGENIC
SBS	Chr7	1286350	A-G	HET	INTERGENIC
SBS	Chr7	13285150	G-A	HOMO	INTERGENIC
SBS	Chr7	2298766	G-A	HET	INTERGENIC
SBS	Chr7	3690298	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	12954343	C-A	HET	INTERGENIC
SBS	Chr8	3092622	C-T	HET	INTERGENIC
SBS	Chr8	7444728	A-T	HET	INTERGENIC
SBS	Chr9	18584204	A-T	HOMO	INTERGENIC
SBS	Chr9	3643453	A-G	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	64479	64496	17	LOC_Os02g01110
Deletion	Chr12	2321903	2321912	9
Deletion	Chr8	2935022	2935031	9	LOC_Os08g05510
Deletion	Chr9	4371625	4371626	1
Deletion	Chr8	5357511	5357516	5	LOC_Os08g09230
Deletion	Chr11	7059450	7059454	4
Deletion	Chr8	7427630	7427641	11
Deletion	Chr10	7572208	7572213	5
Deletion	Chr11	9839747	9839748	1
Deletion	Chr8	10586513	10586520	7
Deletion	Chr12	10711773	10711774	1
Deletion	Chr4	11278483	11278485	2
Deletion	Chr5	14030804	14030805	1
Deletion	Chr5	14105928	14105929	1
Deletion	Chr3	15492851	15492864	13
Deletion	Chr5	15881646	15881663	17
Deletion	Chr10	18655379	18655385	6
Deletion	Chr8	18723640	18723648	8
Deletion	Chr4	18776577	18776582	5
Deletion	Chr11	20028226	20028231	5
Deletion	Chr5	23519348	23523254	3906	LOC_Os05g40040
Deletion	Chr5	24660826	24660828	2
Deletion	Chr12	27145699	27145709	10
Deletion	Chr4	27242508	27242509	1
Deletion	Chr5	29118421	29118437	16
Deletion	Chr2	32306973	32306985	12
Deletion	Chr3	35851227	35851240	13
Deletion	Chr1	36209556	36209604	48	LOC_Os01g62520
Deletion	Chr1	40945233	40945239	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	20932669	20932680	12	LOC_Os02g34884
Insertion	Chr6	10371224	10371224	1
Insertion	Chr6	1161299	1161305	7
Insertion	Chr6	8418697	8418698	2

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9602427	Chr5	23519530	2
Translocation	Chr11	9602434	Chr5	23519358	2
Translocation	Chr5	23519534	Chr1	40423504	LOC_Os05g40040
Translocation	Chr5	23523247	Chr1	40423532

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