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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22201876	A-G	HET	INTERGENIC
SBS	Chr1	31384851	C-T	HET	INTERGENIC
SBS	Chr1	8304479	G-T	HOMO	INTERGENIC
SBS	Chr11	17644711	T-A	HET	INTERGENIC
SBS	Chr11	17678666	T-C	HET	INTERGENIC
SBS	Chr11	8343914	C-T	HET	INTERGENIC
SBS	Chr12	15042392	A-G	HET	INTERGENIC
SBS	Chr12	17410189	T-C	HET	INTRON
SBS	Chr2	11995571	G-A	HET	INTERGENIC
SBS	Chr2	28991475	T-A	HET	INTERGENIC
SBS	Chr2	3323841	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06600
SBS	Chr2	4020722	C-T	HOMO	INTERGENIC
SBS	Chr2	8771670	T-A	HET	INTERGENIC
SBS	Chr3	22963301	A-C	HOMO	INTRON
SBS	Chr3	23097853	C-T	HOMO	INTERGENIC
SBS	Chr3	28090576	C-T	HOMO	INTERGENIC
SBS	Chr3	3032084	T-A	HET	INTERGENIC
SBS	Chr4	15230251	C-T	HET	INTERGENIC
SBS	Chr4	17113073	C-T	HET	INTERGENIC
SBS	Chr4	20571478	G-A	HET	INTERGENIC
SBS	Chr5	14050171	A-G	HOMO	INTERGENIC
SBS	Chr6	12565820	G-A	HET	INTRON
SBS	Chr6	17063418	A-G	HET	INTRON
SBS	Chr7	14864100	A-T	HET	INTERGENIC
SBS	Chr7	14864423	T-A	HET	INTERGENIC
SBS	Chr7	15538876	T-C	HET	INTERGENIC
SBS	Chr7	21567507	A-T	HOMO	INTRON
SBS	Chr7	21567515	C-G	HOMO	INTRON
SBS	Chr8	10972575	C-T	HET	INTERGENIC
SBS	Chr8	1526940	T-A	HOMO	INTRON
SBS	Chr8	3243433	A-G	HET	UTR_3_PRIME
SBS	Chr9	1626102	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g03350

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	667518	667538	20	LOC_Os04g02070
Deletion	Chr2	2261509	2261546	37
Deletion	Chr12	6240379	6531897	291518	38
Deletion	Chr4	7472134	7472147	13
Deletion	Chr5	7703570	7703598	28
Deletion	Chr8	8020084	8020086	2	LOC_Os08g13469
Deletion	Chr1	8301474	8301498	24	LOC_Os01g14840
Deletion	Chr11	8970559	8970580	21	LOC_Os11g16290
Deletion	Chr8	10808618	10808627	9
Deletion	Chr8	11061322	11061324	2	LOC_Os08g18044
Deletion	Chr7	12474538	12474539	1
Deletion	Chr10	13326477	13326481	4
Deletion	Chr12	15042393	15042394	1
Deletion	Chr12	15042395	15042396	1
Deletion	Chr7	15941749	15941750	1
Deletion	Chr11	16683709	16683726	17
Deletion	Chr8	16953150	16953154	4
Deletion	Chr11	17677813	17677843	30
Deletion	Chr3	19507298	19507299	1	LOC_Os03g34270
Deletion	Chr7	21566752	21566764	12
Deletion	Chr10	23187294	23187296	2
Deletion	Chr7	23319728	23319731	3
Deletion	Chr7	24561745	24563674	1929
Deletion	Chr11	25433551	25433555	4	LOC_Os11g42220
Deletion	Chr6	30805494	30805501	7
Deletion	Chr6	30868476	30870179	1703	LOC_Os06g51010

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20517807	20517813	7
Insertion	Chr1	29540051	29540052	2
Insertion	Chr2	9444687	9444688	2
Insertion	Chr3	16128080	16128081	2
Insertion	Chr4	35154234	35154234	1
Insertion	Chr5	1815469	1815469	1
Insertion	Chr5	29432398	29432399	2
Insertion	Chr6	24896936	24896936	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	26535777	26539990
Inversion	Chr7	26535789	26539993

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	166476	Chr3	1013840
Translocation	Chr7	7040253	Chr1	23344141	LOC_Os01g41240
Translocation	Chr12	10628626	Chr6	16470888	LOC_Os12g18374
Translocation	Chr12	22158822	Chr6	13312735

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