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Mutant Information

Mutant Name	FN992-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN992-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3347056	A-T	HOMO	INTRON
SBS	Chr10	7140224	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	20442980	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33910
SBS	Chr3	10324145	T-C	HET	INTRON
SBS	Chr3	27190513	C-T	HOMO	INTERGENIC
SBS	Chr3	27190520	C-T	HOMO	INTERGENIC
SBS	Chr3	7583379	C-A	HET	INTRON
SBS	Chr6	29845308	G-A	HET	INTERGENIC
SBS	Chr6	29845309	G-C	HET	INTERGENIC
SBS	Chr6	7321341	A-G	HET	INTRON
SBS	Chr6	9789466	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g16890
SBS	Chr7	14032278	G-A	HET	INTERGENIC
SBS	Chr7	6082833	G-A	HOMO	INTERGENIC
SBS	Chr9	5495450	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	300875	300877	2	LOC_Os02g01520
Deletion	Chr3	775741	775776	35
Deletion	Chr10	1659799	1659805	6
Deletion	Chr7	4077578	4077588	10	LOC_Os07g08050
Deletion	Chr12	8279196	8280099	903
Deletion	Chr6	8528114	8528122	8
Deletion	Chr6	9435337	9435338	1
Deletion	Chr6	9496178	9496180	2	LOC_Os06g16560
Deletion	Chr11	15537001	15716000	179000	27
Deletion	Chr3	16438303	16438317	14
Deletion	Chr9	16478116	16478121	5
Deletion	Chr4	18557333	18557334	1
Deletion	Chr6	20209104	20209105	1	LOC_Os06g34760
Deletion	Chr4	20370423	20370424	1
Deletion	Chr4	26100183	26100218	35
Deletion	Chr11	27347120	27347121	1
Deletion	Chr5	29587341	29587342	1
Deletion	Chr2	30506516	30506519	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2743564	2743566	3
Insertion	Chr6	4982561	4982562	2
Insertion	Chr9	12973540	12973540	1
Insertion	Chr9	16220472	16220474	3

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	12239980	Chr3	31080057
Translocation	Chr6	22801896	Chr2	24245989
Translocation	Chr3	24819614	Chr1	2790085	LOC_Os01g05820
Translocation	Chr8	28318779	Chr5	5289689