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Mutant Information

Mutant Name	FN994-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN994-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10696927	C-T	HOMO	INTERGENIC
SBS	Chr1	35620690	C-T	HET	INTRON
SBS	Chr1	40960773	A-T	HET	INTERGENIC
SBS	Chr10	1895170	G-A	HET	INTERGENIC
SBS	Chr11	3463905	G-A	HET	UTR_3_PRIME
SBS	Chr2	14790566	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g25370
SBS	Chr2	23801580	C-T	HET	INTERGENIC
SBS	Chr2	32887375	G-T	HOMO	INTRON
SBS	Chr3	23474208	A-T	HET	INTRON
SBS	Chr3	4860665	A-G	HOMO	INTERGENIC
SBS	Chr4	33060287	C-T	HET	INTERGENIC
SBS	Chr5	18455154	T-A	HET	INTERGENIC
SBS	Chr6	24180715	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	28169912	G-A	HET	INTERGENIC
SBS	Chr7	4691403	G-A	HET	INTERGENIC
SBS	Chr8	5362080	C-T	HET	INTRON
SBS	Chr8	7516616	T-C	HET	INTERGENIC
SBS	Chr9	22594118	G-A	HOMO	INTERGENIC
SBS	Chr9	8863741	G-A	HOMO	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2767518	2767550	32	LOC_Os01g05790
Deletion	Chr10	3479638	3479650	12
Deletion	Chr3	10518006	10518009	3	LOC_Os03g18770
Deletion	Chr1	12021650	12021651	1
Deletion	Chr2	14696308	14696317	9
Deletion	Chr9	15354864	15354868	4
Deletion	Chr5	18639690	18639700	10
Deletion	Chr10	20631058	20631068	10	LOC_Os10g38730
Deletion	Chr6	21558697	21558699	2
Deletion	Chr3	22859001	22893000	34000	7
Deletion	Chr3	26272883	26272884	1	LOC_Os03g46450
Deletion	Chr4	27786486	27786488	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	22660516	22660517	2
Insertion	Chr7	24289012	24289013	2
Insertion	Chr7	8338880	8338881	2

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5265566	Chr3	27165207	LOC_Os07g09900
Translocation	Chr11	7117859	Chr4	18038664	LOC_Os04g30230
Translocation	Chr5	10493618	Chr4	18744136
Translocation	Chr9	12257861	Chr1	3225636	LOC_Os01g06790
Translocation	Chr11	13171546	Chr8	9661283	LOC_Os11g22910
Translocation	Chr8	27119961	Chr3	33124644
Translocation	Chr11	27838236	Chr7	27296783	LOC_Os07g45720