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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13881301	T-C	HET	INTRON
SBS	Chr1	21530464	A-G	HET	INTRON
SBS	Chr1	21530465	T-A	HET	INTRON
SBS	Chr1	34497616	G-A	HOMO	INTERGENIC
SBS	Chr1	37457063	C-A	HET	INTERGENIC
SBS	Chr10	17105322	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32649
SBS	Chr10	19280804	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g36060
SBS	Chr10	19350880	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	236602	C-A	HOMO	INTERGENIC
SBS	Chr2	19603350	C-T	HET	INTERGENIC
SBS	Chr2	28336505	A-G	HOMO	INTERGENIC
SBS	Chr3	16348732	C-T	HET	INTRON
SBS	Chr3	19534251	T-G	HET	INTERGENIC
SBS	Chr3	2656107	C-T	HET	INTRON
SBS	Chr3	28265334	G-A	HOMO	INTRON
SBS	Chr3	36316031	G-A	HET	INTERGENIC
SBS	Chr3	4595530	A-T	HET	INTERGENIC
SBS	Chr3	4595531	A-T	HET	INTERGENIC
SBS	Chr4	24151757	A-T	HET	INTRON
SBS	Chr4	5433007	T-A	HET	INTRON
SBS	Chr5	22768029	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	9549230	A-T	HOMO	INTERGENIC
SBS	Chr6	13157022	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	13157023	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g22630
SBS	Chr7	10902128	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18420
SBS	Chr8	21369684	C-T	HET	INTRON
SBS	Chr8	5477280	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g09450
SBS	Chr9	15819792	C-A	HOMO	INTERGENIC
SBS	Chr9	17376632	C-T	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2606339	2606340	1
Deletion	Chr5	5572001	5584000	12000	2
Deletion	Chr7	7955006	7955007	1
Deletion	Chr4	8682111	8682112	1
Deletion	Chr8	10491501	10534302	42801	5
Deletion	Chr3	10844052	10844053	1
Deletion	Chr2	11326001	11335000	9000	2
Deletion	Chr6	13024891	13024899	8
Deletion	Chr3	13276001	13298000	22000	4
Deletion	Chr8	13706635	13706636	1
Deletion	Chr1	14583116	14583127	11	LOC_Os01g25730
Deletion	Chr11	15296372	15296373	1
Deletion	Chr7	17180970	17180976	6
Deletion	Chr4	17563377	17563384	7
Deletion	Chr9	19349268	19349275	7
Deletion	Chr3	20910591	20910594	3
Deletion	Chr10	21591680	21591695	15
Deletion	Chr8	22700990	22700991	1
Deletion	Chr1	24765629	24765633	4
Deletion	Chr5	24932001	24955000	23000	5
Deletion	Chr7	24992952	24992953	1
Deletion	Chr5	26072001	26095000	23000	4
Deletion	Chr6	27924993	27924999	6	LOC_Os06g46060
Deletion	Chr2	30597335	30605231	7896
Deletion	Chr3	31027010	31027011	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	7567958	7567958	1
Insertion	Chr3	14962291	14962292	2
Insertion	Chr4	33654286	33654286	1
Insertion	Chr9	15606405	15606405	1	LOC_Os09g25980

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1324219	Chr2	29746299	LOC_Os02g48590
Translocation	Chr9	1330290	Chr2	29742887
Translocation	Chr7	19888022	Chr2	30604156	LOC_Os07g33270
Translocation	Chr7	19888060	Chr2	30605256	LOC_Os07g33270

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