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| Mutant Information |
|---|
| Mutant Name | FN996-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN996-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27166631 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 12307221 | C-A | HET | INTRON | |
| SBS | Chr10 | 12460549 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 1064961 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g03040 |
| SBS | Chr12 | 1894282 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g04440 |
| SBS | Chr12 | 5217340 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g09850 |
| SBS | Chr2 | 14140234 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 2380426 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g05020 |
| SBS | Chr2 | 32826447 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 8275180 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 26232829 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 26417267 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 29437634 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 30514490 | A-T | HET | INTRON | |
| SBS | Chr3 | 5024961 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 14527657 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g25140 |
| SBS | Chr4 | 18445628 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g30870 |
| SBS | Chr5 | 12797453 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 14065525 | T-G | HET | STOP_GAINED | LOC_Os05g24310 |
| SBS | Chr6 | 1917534 | C-A | HET | INTRON | |
| SBS | Chr7 | 10551904 | T-C | HOMO | INTRON | |
| SBS | Chr7 | 10918288 | A-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 22124493 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 26951421 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 27565090 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr7 | 2958685 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 7296201 | T-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 18353006 | C-T | HET | INTRON | |
| SBS | Chr8 | 9591308 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr9 | 11541782 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g19280 |
| SBS | Chr9 | 12958352 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g21430 |
| SBS | Chr9 | 4250877 | C-T | HET | UTR_5_PRIME |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 6283546 | 6283550 | 4 | |
| Deletion | Chr6 | 11074203 | 11074208 | 5 | LOC_Os06g19444 |
| Deletion | Chr11 | 11539879 | 11539883 | 4 | |
| Deletion | Chr6 | 12440700 | 12440701 | 1 | |
| Deletion | Chr7 | 12754564 | 12754567 | 3 | |
| Deletion | Chr12 | 13572257 | 13572260 | 3 | |
| Deletion | Chr5 | 14828814 | 14828818 | 4 | |
| Deletion | Chr6 | 19412798 | 19412803 | 5 | |
| Deletion | Chr5 | 25397096 | 25397100 | 4 | |
| Deletion | Chr3 | 33045468 | 33045469 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 6417440 | 6417442 | 3 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 6722637 | 7516831 | LOC_Os04g13470 |
| Inversion | Chr11 | 13393080 | 13501993 | LOC_Os11g23234 |
| Inversion | Chr2 | 14210824 | 15300370 | LOC_Os02g26060 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 4040418 | Chr6 | 8106080 | |
| Translocation | Chr8 | 12109570 | Chr2 | 9635650 | |
| Translocation | Chr12 | 25707967 | Chr9 | 15635681 | LOC_Os09g26010 |
| Translocation | Chr4 | 27746231 | Chr3 | 16831604 | |
| Translocation | Chr11 | 27826777 | Chr6 | 25898116 |