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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10435962	T-C	HOMO	INTERGENIC
SBS	Chr1	18845021	C-T	HET	INTERGENIC
SBS	Chr1	28897690	C-A	HET	INTERGENIC
SBS	Chr1	28897691	T-A	HET	INTERGENIC
SBS	Chr1	34315382	C-A	HET	INTERGENIC
SBS	Chr2	2593321	T-A	HOMO	INTERGENIC
SBS	Chr3	34732545	G-A	HOMO	INTERGENIC
SBS	Chr4	6607879	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12040
SBS	Chr4	10493611	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	10580446	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g19060
SBS	Chr4	12881329	C-T	HOMO	STOP_GAINED	LOC_Os04g22720
SBS	Chr4	12881330	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g22720
SBS	Chr5	25087452	G-T	HET	INTERGENIC
SBS	Chr7	12633164	T-A	HOMO	INTRON
SBS	Chr7	22689871	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g37830
SBS	Chr7	22689872	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g37830
SBS	Chr7	28110265	A-G	HET	INTERGENIC
SBS	Chr9	452337	G-A	HET	INTERGENIC
SBS	Chr9	14254699	T-C	HET	INTERGENIC
SBS	Chr10	4976293	C-G	HET	INTERGENIC
SBS	Chr12	13562956	C-T	HOMO	INTERGENIC
SBS	Chr12	23987606	C-G	HOMO	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1173210	1173218	8
Deletion	Chr5	2572060	2572061	1
Deletion	Chr1	5411617	5411627	10
Deletion	Chr12	8509600	8509612	12	LOC_Os12g14860
Deletion	Chr4	9482798	9482812	14
Deletion	Chr9	12005374	12005381	7	LOC_Os09g20040
Deletion	Chr7	12633056	12633080	24
Deletion	Chr1	14939281	14939286	5
Deletion	Chr3	17612680	17612681	1
Deletion	Chr3	24927011	24927015	4
Deletion	Chr5	25772627	25772638	11	LOC_Os05g44290
Deletion	Chr8	26591433	26591436	3
Deletion	Chr3	27803499	27803522	23
Deletion	Chr5	29089579	29089582	3
Deletion	Chr5	29116674	29116682	8
Deletion	Chr5	29518658	29518660	2
Deletion	Chr1	37402536	37402537	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr8	13065608	13065608	1
Insertion	Chr3	23671316	23671319	4
Insertion	Chr8	9966151	9966153	3
Insertion	Chr1	5369346	5369346	1
Insertion	Chr1	30718511	30718511	1
Insertion	Chr11	25200701	25200701	1
Insertion	Chr3	2221635	2221635	1
Insertion	Chr4	19622677	19622677	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	10178659	Chr4	905152
Translocation	Chr12	12239979	Chr3	31080057

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