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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10140006	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g18100
SBS	Chr1	26656645	A-T	HET	INTRON
SBS	Chr2	6603447	T-A	HOMO	INTRON
SBS	Chr2	27174724	C-T	HET	INTERGENIC
SBS	Chr2	27557104	G-A	HET	INTERGENIC
SBS	Chr3	3403963	T-C	HET	UTR_3_PRIME
SBS	Chr3	3403979	C-T	HET	UTR_3_PRIME
SBS	Chr3	3403989	T-C	HET	UTR_3_PRIME
SBS	Chr3	4362788	G-A	HET	INTRON
SBS	Chr3	11506627	T-C	HOMO	INTERGENIC
SBS	Chr3	17557707	T-C	HET	INTERGENIC
SBS	Chr4	8974692	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16510
SBS	Chr4	19830044	T-A	HET	INTERGENIC
SBS	Chr4	25798994	C-T	HET	INTERGENIC
SBS	Chr4	25798996	A-T	HET	INTERGENIC
SBS	Chr5	17658641	C-T	HOMO	INTERGENIC
SBS	Chr5	18098072	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g31130
SBS	Chr6	18087423	G-A	HET	INTERGENIC
SBS	Chr6	23005869	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g38760
SBS	Chr6	27808661	A-G	HET	INTERGENIC
SBS	Chr7	11892231	T-C	HOMO	INTRON
SBS	Chr7	11892232	T-G	HOMO	INTRON
SBS	Chr7	23417803	A-G	HET	INTERGENIC
SBS	Chr8	1876794	G-A	HET	INTRON
SBS	Chr8	17031492	T-C	HET	INTERGENIC
SBS	Chr8	21286093	T-A	HET	INTERGENIC
SBS	Chr9	21887733	C-T	HET	INTRON
SBS	Chr10	5870088	A-G	HET	INTERGENIC
SBS	Chr12	22146492	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36120

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2599750	2599757	7
Deletion	Chr5	3842714	3842721	7	LOC_Os05g07260
Deletion	Chr4	4982011	4982016	5
Deletion	Chr3	5565072	5565082	10
Deletion	Chr9	7008759	7008785	26
Deletion	Chr9	7052659	7052660	1
Deletion	Chr8	9435811	9435812	1
Deletion	Chr6	13832633	13832658	25
Deletion	Chr5	16672423	16672424	1
Deletion	Chr3	17557732	17557749	17
Deletion	Chr11	19194563	19194574	11
Deletion	Chr4	19654352	19654375	23	LOC_Os04g32620
Deletion	Chr5	19804519	19804526	7
Deletion	Chr9	21981973	21981989	16
Deletion	Chr5	22116289	22116294	5
Deletion	Chr4	26420001	26429000	9000	LOC_Os04g44640
Deletion	Chr4	27346178	27346212	34	LOC_Os04g46170
Deletion	Chr4	29330966	29330969	3
Deletion	Chr4	29665422	29665423	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	4080497	4080497	1
Insertion	Chr5	25429885	25429886	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	27482541	28356482

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4748871	Chr5	14016592
Translocation	Chr7	7983912	Chr4	33422738	2
Translocation	Chr7	7985294	Chr4	33422732	2
Translocation	Chr8	10991585	Chr3	15245722	2
Translocation	Chr10	13430858	Chr5	5645855	LOC_Os05g10340

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