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Mutant Information

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29032798	T-C	HET	INTRON
SBS	Chr1	29531898	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51360
SBS	Chr1	3384573	G-T	HET	INTERGENIC
SBS	Chr12	11685245	C-G	HET	INTERGENIC
SBS	Chr2	18677777	C-A	HET	INTERGENIC
SBS	Chr2	30148524	G-C	HET	UTR_3_PRIME
SBS	Chr4	27421361	G-T	HET	INTRON
SBS	Chr4	27583120	G-A	HET	INTRON
SBS	Chr4	34913099	T-A	HET	INTERGENIC
SBS	Chr5	10985037	C-A	HET	INTRON
SBS	Chr5	25260058	G-A	HET	INTERGENIC
SBS	Chr6	1337765	A-G	HET	INTERGENIC
SBS	Chr6	17285875	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30030
SBS	Chr7	10004483	C-T	HET	INTERGENIC
SBS	Chr7	24046161	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	11044121	C-T	HET	INTERGENIC

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	5526669	5526670	1
Deletion	Chr5	14143000	14143001	1
Deletion	Chr10	15859724	15859732	8
Deletion	Chr2	21634283	21634285	2
Deletion	Chr11	24927202	24927226	24
Deletion	Chr3	36378169	36378190	21
Deletion	Chr1	41445001	41455000	10000	LOC_Os01g71540
Deletion	Chr1	41475001	41560000	85000	15

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23960258	23960263	6	LOC_Os01g42270
Insertion	Chr1	4624747	4624751	5
Insertion	Chr10	16103671	16103671	1
Insertion	Chr11	16367368	16367369	2
Insertion	Chr2	16565027	16565027	1
Insertion	Chr2	16822825	16822826	2
Insertion	Chr2	17808900	17808913	14	LOC_Os02g29960
Insertion	Chr2	19173701	19173706	6
Insertion	Chr2	19176789	19176792	4
Insertion	Chr2	25286812	25286813	2
Insertion	Chr3	25283995	25283996	2
Insertion	Chr3	32810741	32810747	7
Insertion	Chr4	12339143	12339143	1
Insertion	Chr5	26212567	26212567	1
Insertion	Chr5	763686	763687	2	LOC_Os05g02350
Insertion	Chr6	21454452	21454459	8
Insertion	Chr6	22502905	22502906	2
Insertion	Chr7	11319117	11319118	2
Insertion	Chr7	12851170	12851171	2
Insertion	Chr7	4714237	4714260	24
Insertion	Chr8	234871	234876	6
Insertion	Chr9	13499710	13499711	2

No Inversion

No Translocation

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