Search Results
Mutant Information |
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Mutant Name | FN_398-1 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN_398-1 Alignment File |
Seed Availability | No |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 16
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 3384573 | G-T | HET | INTERGENIC | |
SBS | Chr1 | 29032798 | T-C | HET | INTRON | |
SBS | Chr1 | 29531898 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g51360 |
SBS | Chr2 | 18677777 | C-A | HET | INTERGENIC | |
SBS | Chr2 | 30148524 | G-C | HET | UTR_3_PRIME | |
SBS | Chr4 | 27421361 | G-T | HET | INTRON | |
SBS | Chr4 | 27583120 | G-A | HET | INTRON | |
SBS | Chr4 | 34913099 | T-A | HET | INTERGENIC | |
SBS | Chr5 | 10985037 | C-A | HET | INTRON | |
SBS | Chr5 | 25260058 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 1337765 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 17285875 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g30030 |
SBS | Chr7 | 10004483 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 24046161 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr9 | 11044121 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 11685245 | C-G | HET | INTERGENIC |
Deletions: 8
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 5526669 | 5526670 | 1 | |
Deletion | Chr5 | 14143000 | 14143001 | 1 | |
Deletion | Chr10 | 15859724 | 15859732 | 8 | |
Deletion | Chr2 | 21634283 | 21634285 | 2 | |
Deletion | Chr11 | 24927202 | 24927226 | 24 | |
Deletion | Chr3 | 36378169 | 36378190 | 21 | |
Deletion | Chr1 | 41445001 | 41455000 | 10000 | LOC_Os01g71540 |
Deletion | Chr1 | 41475001 | 41560000 | 85000 | 15 |
Insertions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr7 | 4714237 | 4714260 | 24 | |
Insertion | Chr2 | 17808900 | 17808913 | 14 | LOC_Os02g29960 |
Insertion | Chr6 | 21454452 | 21454459 | 8 | |
Insertion | Chr3 | 32810741 | 32810747 | 7 | |
Insertion | Chr1 | 23960258 | 23960263 | 6 | LOC_Os01g42270 |
Insertion | Chr2 | 19173701 | 19173706 | 6 | |
Insertion | Chr8 | 234871 | 234876 | 6 | |
Insertion | Chr1 | 4624747 | 4624751 | 5 | |
Insertion | Chr2 | 19176789 | 19176792 | 4 | |
Insertion | Chr11 | 16367368 | 16367369 | 2 | |
Insertion | Chr2 | 16822825 | 16822826 | 2 | |
Insertion | Chr2 | 25286812 | 25286813 | 2 | |
Insertion | Chr3 | 25283995 | 25283996 | 2 | |
Insertion | Chr5 | 763686 | 763687 | 2 | LOC_Os05g02350 |
Insertion | Chr6 | 22502905 | 22502906 | 2 | |
Insertion | Chr7 | 11319117 | 11319118 | 2 | |
Insertion | Chr7 | 12851170 | 12851171 | 2 | |
Insertion | Chr9 | 13499710 | 13499711 | 2 | |
Insertion | Chr10 | 16103671 | 16103671 | 1 | |
Insertion | Chr2 | 16565027 | 16565027 | 1 | |
Insertion | Chr4 | 12339143 | 12339143 | 1 | |
Insertion | Chr5 | 26212567 | 26212567 | 1 |
No Inversion
No Translocation