Search Results
| Mutant Information |
|---|
| Mutant Name | FN_543-2-6 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_543-2-6 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20431524 | G-A | HET | LOC_Os01g36780 | |
| SBS | Chr1 | 25079463 | A-C | HET | ||
| SBS | Chr1 | 39017877 | G-T | HET | ||
| SBS | Chr1 | 3724224 | C-T | Homo | ||
| SBS | Chr1 | 16281383 | T-C | Homo | ||
| SBS | Chr1 | 16281384 | T-C | Homo | ||
| SBS | Chr1 | 41260489 | G-A | Homo | ||
| SBS | Chr1 | 41960393 | A-C | Homo | LOC_Os01g72340 | |
| SBS | Chr11 | 3626234 | T-C | HET | ||
| SBS | Chr11 | 3626335 | A-G | HET | ||
| SBS | Chr11 | 14716748 | A-G | HET | ||
| SBS | Chr11 | 16486567 | C-T | Homo | ||
| SBS | Chr12 | 5279232 | T-G | HET | ||
| SBS | Chr12 | 25109336 | T-C | HET | ||
| SBS | Chr12 | 13084735 | T-C | Homo | LOC_Os12g23130 | |
| SBS | Chr12 | 14746130 | G-C | Homo | ||
| SBS | Chr12 | 16071854 | C-T | Homo | ||
| SBS | Chr2 | 20812872 | T-C | HET | ||
| SBS | Chr2 | 22163224 | C-T | HET | ||
| SBS | Chr3 | 2661374 | C-T | HET | ||
| SBS | Chr3 | 22955767 | A-C | HET | ||
| SBS | Chr3 | 22955770 | C-A | HET | ||
| SBS | Chr3 | 24867042 | C-T | HET | ||
| SBS | Chr3 | 28075210 | C-G | HET | ||
| SBS | Chr3 | 30803458 | C-A | Homo | ||
| SBS | Chr4 | 23789074 | A-T | Homo | ||
| SBS | Chr5 | 6444935 | G-T | HET | ||
| SBS | Chr5 | 12423946 | C-A | HET | ||
| SBS | Chr5 | 1923530 | C-T | Homo | ||
| SBS | Chr7 | 5920690 | C-T | HET | ||
| SBS | Chr7 | 17952563 | A-C | HET | ||
| SBS | Chr7 | 2049958 | G-C | Homo | ||
| SBS | Chr8 | 23764425 | G-A | HET | ||
| SBS | Chr8 | 6950294 | T-A | Homo | LOC_Os08g11850 | |
| SBS | Chr9 | 1053822 | G-A | HET | ||
| SBS | Chr9 | 1528339 | G-T | HET | ||
| SBS | Chr9 | 5379148 | C-A | HET | LOC_Os09g09900 | |
| SBS | Chr9 | 17411151 | T-A | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 468335 | 468346 | 11 | |
| Deletion | Chr6 | 3769882 | 3769890 | 8 | LOC_Os06g07770 |
| Deletion | Chr4 | 5671722 | 5671723 | 1 | |
| Deletion | Chr3 | 7909401 | 7909404 | 3 | |
| Deletion | Chr4 | 13429081 | 13429086 | 5 | |
| Deletion | Chr1 | 16284675 | 16284681 | 6 | |
| Deletion | Chr3 | 17424396 | 17424407 | 11 | LOC_Os03g30530 |
| Deletion | Chr3 | 17828678 | 17828679 | 1 | |
| Deletion | Chr9 | 18647961 | 18647962 | 1 | |
| Deletion | Chr6 | 20353948 | 20353949 | 1 | |
| Deletion | Chr12 | 23009880 | 23009905 | 25 | |
| Deletion | Chr8 | 27742325 | 27742326 | 1 | |
| Deletion | Chr4 | 27926202 | 27926203 | 1 | |
| Deletion | Chr6 | 29187784 | 29187787 | 3 | |
| Deletion | Chr1 | 33209779 | 33209784 | 5 | |
| Deletion | Chr2 | 34744030 | 34744031 | 1 |
Insertions: 9
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 2589005 | Chr4 | 25691926 | 2 |