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| Mutant Information |
|---|
| Mutant Name | FN_546-3-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_546-3-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23924428 | C-T | HET | ||
| SBS | Chr1 | 23925345 | C-T | HET | ||
| SBS | Chr1 | 8220751 | C-T | HET | ||
| SBS | Chr11 | 18766216 | C-T | Homo | ||
| SBS | Chr11 | 20246008 | G-A | Homo | LOC_Os11g34590 | |
| SBS | Chr11 | 26801964 | G-A | HET | LOC_Os11g44340 | |
| SBS | Chr12 | 14329702 | A-T | HET | ||
| SBS | Chr12 | 14879007 | T-C | Homo | ||
| SBS | Chr2 | 24069874 | T-G | HET | LOC_Os02g39840 | |
| SBS | Chr2 | 26361774 | G-A | HET | ||
| SBS | Chr2 | 29820274 | C-T | HET | ||
| SBS | Chr2 | 34759293 | T-A | Homo | ||
| SBS | Chr3 | 15694193 | A-C | Homo | ||
| SBS | Chr3 | 7538188 | G-A | Homo | LOC_Os03g13900 | |
| SBS | Chr4 | 17431235 | C-T | HET | LOC_Os04g29350 | |
| SBS | Chr4 | 8555299 | G-T | HET | ||
| SBS | Chr4 | 8555300 | G-T | HET | ||
| SBS | Chr5 | 11252265 | A-C | Homo | ||
| SBS | Chr5 | 19501232 | G-A | HET | ||
| SBS | Chr5 | 28512038 | C-T | HET | ||
| SBS | Chr6 | 17200694 | A-G | HET | ||
| SBS | Chr6 | 5315069 | T-G | HET | ||
| SBS | Chr7 | 16528073 | G-T | Homo | LOC_Os07g28290 | |
| SBS | Chr8 | 10683643 | G-A | HET | ||
| SBS | Chr8 | 22007893 | A-C | Homo | LOC_Os08g34950 | |
| SBS | Chr9 | 18496473 | C-A | Homo | ||
| SBS | Chr9 | 21447484 | T-C | Homo | ||
| SBS | Chr9 | 2534348 | C-T | Homo | ||
| SBS | Chr9 | 9214657 | C-T | Homo | ||
| SBS | Chr9 | 9521935 | G-A | Homo |
Deletions: 28
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 126661 | 126717 | 56 | |
| Deletion | Chr9 | 1246825 | 1246829 | 4 | |
| Deletion | Chr4 | 2804117 | 2804118 | 1 | |
| Deletion | Chr4 | 3074877 | 3074878 | 1 | |
| Deletion | Chr4 | 4190710 | 4190719 | 9 | |
| Deletion | Chr4 | 4867141 | 4867143 | 2 | |
| Deletion | Chr6 | 10140685 | 10140697 | 12 | |
| Deletion | Chr11 | 10364349 | 10364352 | 3 | |
| Deletion | Chr6 | 12297430 | 12297436 | 6 | |
| Deletion | Chr4 | 13930864 | 13930866 | 2 | |
| Deletion | Chr4 | 14248594 | 14254971 | 6377 | LOC_Os04g24804 |
| Deletion | Chr3 | 14439951 | 14439961 | 10 | |
| Deletion | Chr12 | 15431069 | 15434121 | 3052 | LOC_Os12g26410 |
| Deletion | Chr1 | 17184574 | 17184575 | 1 | LOC_Os01g31420 |
| Deletion | Chr5 | 17556628 | 17556632 | 4 | |
| Deletion | Chr9 | 17759043 | 17759044 | 1 | |
| Deletion | Chr2 | 19689548 | 19689549 | 1 | |
| Deletion | Chr3 | 20184955 | 20184957 | 2 | |
| Deletion | Chr7 | 21727579 | 21727580 | 1 | |
| Deletion | Chr2 | 22518347 | 22518350 | 3 | |
| Deletion | Chr1 | 24814022 | 24814028 | 6 | LOC_Os01g43380 |
| Deletion | Chr12 | 25796975 | 25796979 | 4 | |
| Deletion | Chr11 | 26600847 | 26600855 | 8 | |
| Deletion | Chr5 | 29052266 | 29052272 | 6 | LOC_Os05g50680 |
| Deletion | Chr2 | 29561726 | 29561727 | 1 | |
| Deletion | Chr3 | 30080022 | 30080031 | 9 | |
| Deletion | Chr3 | 32299801 | 32306801 | 7000 | |
| Deletion | Chr2 | 34791566 | 34791583 | 17 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 21338783 | 21338784 | 2 | |
| Insertion | Chr12 | 22749777 | 22749777 | 1 | |
| Insertion | Chr2 | 27451395 | 27451395 | 1 | |
| Insertion | Chr3 | 347643 | 347643 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 23584600 | 23607129 | LOC_Os01g41650 |
| Inversion | Chr8 | 23594394 | 23633302 | LOC_Os08g37350 |
| Inversion | Chr2 | 28701770 | 29136535 | LOC_Os02g47670 |
No Translocation