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| Mutant Information |
|---|
| Mutant Name | FN_552-1-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_552-1-1 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 39794482 | G-C | HET | ||
| SBS | Chr1 | 4090439 | C-A | HET | ||
| SBS | Chr1 | 6050475 | G-A | Homo | ||
| SBS | Chr10 | 21888390 | G-A | HET | LOC_Os10g40780 | |
| SBS | Chr10 | 4449157 | A-G | Homo | ||
| SBS | Chr11 | 10378174 | G-A | HET | ||
| SBS | Chr11 | 13891448 | T-C | HET | ||
| SBS | Chr11 | 16134403 | G-A | HET | ||
| SBS | Chr11 | 21647929 | C-A | Homo | ||
| SBS | Chr11 | 8948006 | A-G | HET | ||
| SBS | Chr12 | 18158840 | C-T | Homo | ||
| SBS | Chr2 | 13461422 | C-T | HET | LOC_Os02g22570 | |
| SBS | Chr2 | 31489602 | G-A | HET | ||
| SBS | Chr3 | 10142325 | G-T | HET | ||
| SBS | Chr3 | 1775020 | G-T | HET | ||
| SBS | Chr3 | 23198284 | C-T | Homo | ||
| SBS | Chr3 | 33721243 | T-A | HET | ||
| SBS | Chr4 | 27288265 | A-T | Homo | ||
| SBS | Chr4 | 29781919 | C-T | HET | ||
| SBS | Chr5 | 15301377 | C-T | HET | LOC_Os05g26300 | |
| SBS | Chr5 | 19484392 | C-A | Homo | ||
| SBS | Chr5 | 8870154 | C-T | HET | ||
| SBS | Chr6 | 10481619 | G-T | HET | ||
| SBS | Chr6 | 12887652 | G-A | HET | ||
| SBS | Chr6 | 17028311 | T-C | HET | ||
| SBS | Chr6 | 25121669 | A-G | Homo | ||
| SBS | Chr6 | 30633961 | C-T | HET | ||
| SBS | Chr7 | 6006704 | T-C | Homo | ||
| SBS | Chr8 | 9664461 | G-A | Homo | ||
| SBS | Chr9 | 13244285 | C-T | HET | LOC_Os09g21860 | |
| SBS | Chr9 | 7323076 | G-T | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 666816 | 666826 | 10 | |
| Deletion | Chr5 | 3526712 | 3526732 | 20 | |
| Deletion | Chr5 | 4231791 | 4231798 | 7 | |
| Deletion | Chr7 | 4711381 | 4722984 | 11603 | 3 |
| Deletion | Chr12 | 5063571 | 5063576 | 5 | |
| Deletion | Chr11 | 5124874 | 5124877 | 3 | |
| Deletion | Chr10 | 5462784 | 5462785 | 1 | |
| Deletion | Chr9 | 8986563 | 8986574 | 11 | |
| Deletion | Chr12 | 10194761 | 10194769 | 8 | |
| Deletion | Chr2 | 10732113 | 10732116 | 3 | LOC_Os02g18440 |
| Deletion | Chr10 | 11690331 | 11690337 | 6 | |
| Deletion | Chr2 | 18780688 | 18780693 | 5 | |
| Deletion | Chr3 | 21217832 | 21217842 | 10 | |
| Deletion | Chr3 | 23468325 | 23468330 | 5 | |
| Deletion | Chr8 | 23946894 | 23946899 | 5 | LOC_Os08g37800 |
| Deletion | Chr5 | 24907637 | 24907645 | 8 | |
| Deletion | Chr4 | 34423387 | 34423391 | 4 | |
| Deletion | Chr3 | 35779409 | 35779410 | 1 | |
| Deletion | Chr1 | 39794485 | 39794486 | 1 |
Insertions: 7
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 4005470 | 4021274 | LOC_Os07g07974 |
| Inversion | Chr4 | 26635522 | 26652025 |
No Translocation