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| Mutant Information |
|---|
| Mutant Name | FN_769-4-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_769-4-1 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14705204 | G-T | Homo | ||
| SBS | Chr1 | 16146358 | C-T | Homo | ||
| SBS | Chr1 | 17814680 | C-T | HET | ||
| SBS | Chr1 | 20140581 | G-A | Homo | ||
| SBS | Chr1 | 29860971 | T-G | Homo | ||
| SBS | Chr1 | 42978329 | G-A | Homo | ||
| SBS | Chr10 | 15723341 | C-T | Homo | ||
| SBS | Chr10 | 22449684 | G-A | HET | ||
| SBS | Chr10 | 2814692 | T-C | HET | ||
| SBS | Chr11 | 17675301 | G-A | Homo | LOC_Os11g30410 | |
| SBS | Chr11 | 23674967 | G-A | Homo | ||
| SBS | Chr12 | 11007500 | A-G | HET | ||
| SBS | Chr2 | 21097902 | C-T | Homo | ||
| SBS | Chr2 | 23470544 | A-C | HET | ||
| SBS | Chr2 | 8351796 | T-A | Homo | ||
| SBS | Chr3 | 10509817 | C-T | HET | ||
| SBS | Chr3 | 32380754 | C-T | Homo | LOC_Os03g56830 | |
| SBS | Chr3 | 9327567 | G-A | HET | ||
| SBS | Chr4 | 25858679 | G-C | HET | LOC_Os04g43690 | |
| SBS | Chr5 | 19149242 | C-T | Homo | ||
| SBS | Chr5 | 19153082 | C-T | Homo | LOC_Os05g32700 | |
| SBS | Chr5 | 29807629 | G-A | Homo | ||
| SBS | Chr5 | 4531441 | T-G | HET | LOC_Os05g08300 | |
| SBS | Chr7 | 5812994 | C-A | HET | LOC_Os07g10700 | |
| SBS | Chr8 | 10969315 | T-C | Homo | ||
| SBS | Chr8 | 26245064 | A-G | HET | ||
| SBS | Chr9 | 11426452 | G-T | Homo | ||
| SBS | Chr9 | 1468815 | A-G | Homo | ||
| SBS | Chr9 | 39054 | T-C | HET | ||
| SBS | Chr9 | 4743700 | T-A | HET | ||
| SBS | Chr9 | 5459582 | A-T | Homo | ||
| SBS | Chr9 | 6735634 | G-C | Homo | ||
| SBS | Chr9 | 6997151 | G-A | Homo |
Deletions: 25
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 207302 | 207304 | 2 | |
| Deletion | Chr2 | 511663 | 511671 | 8 | LOC_Os02g01940 |
| Deletion | Chr10 | 1885235 | 1885305 | 70 | |
| Deletion | Chr2 | 2111157 | 2111166 | 9 | LOC_Os02g04690 |
| Deletion | Chr6 | 3150965 | 3150979 | 14 | |
| Deletion | Chr10 | 3848815 | 3848825 | 10 | |
| Deletion | Chr1 | 4913675 | 4913676 | 1 | |
| Deletion | Chr7 | 7316249 | 7316250 | 1 | |
| Deletion | Chr2 | 7988252 | 7988282 | 30 | LOC_Os02g14490 |
| Deletion | Chr4 | 8148929 | 8148935 | 6 | |
| Deletion | Chr10 | 9000709 | 9000715 | 6 | |
| Deletion | Chr7 | 9248216 | 9248217 | 1 | |
| Deletion | Chr12 | 10884145 | 10884146 | 1 | |
| Deletion | Chr10 | 11446801 | 11539701 | 92900 | 15 |
| Deletion | Chr11 | 12813586 | 12813595 | 9 | LOC_Os11g22350 |
| Deletion | Chr11 | 13391729 | 13391738 | 9 | |
| Deletion | Chr4 | 13843702 | 13843721 | 19 | |
| Deletion | Chr11 | 16097514 | 16097519 | 5 | |
| Deletion | Chr11 | 23942779 | 23942791 | 12 | LOC_Os11g40150 |
| Deletion | Chr11 | 24210815 | 24210816 | 1 | |
| Deletion | Chr3 | 24738655 | 24738656 | 1 | |
| Deletion | Chr3 | 27274590 | 27274591 | 1 | |
| Deletion | Chr3 | 28412108 | 28412119 | 11 | |
| Deletion | Chr1 | 31570357 | 31570367 | 10 | |
| Deletion | Chr4 | 35120818 | 35120830 | 12 |
Insertions: 6
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 10650318 | 11539716 | LOC_Os10g22310 |
| Inversion | Chr10 | 11095926 | 11446785 | LOC_Os10g21660 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 6590993 | Chr10 | 11450217 | LOC_Os10g22164 |