Search Results
| Mutant Information |
|---|
| Mutant Name | FN_770-6-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_770-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25583298 | G-T | Homo | ||
| SBS | Chr1 | 25583299 | A-T | Homo | ||
| SBS | Chr10 | 1756347 | A-T | Homo | ||
| SBS | Chr10 | 1756349 | A-T | Homo | ||
| SBS | Chr10 | 1756350 | C-T | Homo | ||
| SBS | Chr10 | 9016230 | G-A | Homo | LOC_Os10g17820 | |
| SBS | Chr11 | 27744486 | G-A | Homo | ||
| SBS | Chr11 | 27744487 | G-A | Homo | ||
| SBS | Chr12 | 8247112 | T-C | HET | ||
| SBS | Chr12 | 8921271 | G-T | HET | LOC_Os12g15620 | |
| SBS | Chr2 | 15538354 | C-T | Homo | ||
| SBS | Chr2 | 30028139 | A-T | Homo | ||
| SBS | Chr3 | 1843474 | T-C | HET | ||
| SBS | Chr4 | 10526624 | G-A | HET | ||
| SBS | Chr4 | 11647706 | T-C | HET | ||
| SBS | Chr4 | 29159933 | T-A | HET | ||
| SBS | Chr5 | 20898138 | C-T | HET | ||
| SBS | Chr5 | 4367302 | A-T | Homo | ||
| SBS | Chr5 | 4487042 | A-T | Homo | ||
| SBS | Chr6 | 25917208 | G-A | HET | ||
| SBS | Chr6 | 16041291 | C-T | Homo | ||
| SBS | Chr7 | 5775516 | G-A | HET | LOC_Os07g10630 | |
| SBS | Chr7 | 6462536 | C-T | HET | ||
| SBS | Chr7 | 2822451 | C-T | Homo | ||
| SBS | Chr7 | 19454404 | C-T | Homo | ||
| SBS | Chr7 | 24156166 | T-A | Homo | ||
| SBS | Chr8 | 5805900 | T-C | HET | ||
| SBS | Chr8 | 6925329 | G-A | HET | ||
| SBS | Chr8 | 26400762 | G-T | HET | LOC_Os08g41800 | |
| SBS | Chr8 | 26400763 | G-A | HET | ||
| SBS | Chr8 | 26530100 | C-T | HET | ||
| SBS | Chr8 | 160744 | A-T | Homo | ||
| SBS | Chr8 | 16121357 | G-A | Homo | ||
| SBS | Chr8 | 16753428 | G-C | Homo |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 4002898 | 4002904 | 6 | |
| Deletion | Chr10 | 6271101 | 6431201 | 160100 | 28 |
| Deletion | Chr10 | 7348051 | 7348059 | 8 | |
| Deletion | Chr3 | 12131700 | 12131701 | 1 | |
| Deletion | Chr6 | 12458823 | 12458826 | 3 | LOC_Os06g21600 |
| Deletion | Chr8 | 13402052 | 13402054 | 2 | |
| Deletion | Chr5 | 15092218 | 15092228 | 10 | |
| Deletion | Chr9 | 16379750 | 16379762 | 12 | |
| Deletion | Chr5 | 16904115 | 16904120 | 5 | |
| Deletion | Chr1 | 19033131 | 19033143 | 12 | |
| Deletion | Chr5 | 19062034 | 19062117 | 83 | |
| Deletion | Chr3 | 20284318 | 20284323 | 5 | |
| Deletion | Chr5 | 21006501 | 21099801 | 93300 | 14 |
| Deletion | Chr7 | 21330758 | 21330761 | 3 | |
| Deletion | Chr1 | 24591308 | 24591337 | 29 | |
| Deletion | Chr6 | 25009486 | 25009495 | 9 | |
| Deletion | Chr1 | 25773948 | 25773951 | 3 | |
| Deletion | Chr8 | 26399916 | 26399946 | 30 | |
| Deletion | Chr7 | 27191405 | 27191406 | 1 | |
| Deletion | Chr6 | 27772422 | 27779154 | 6732 | 2 |
| Deletion | Chr6 | 27863271 | 27863276 | 5 | |
| Deletion | Chr1 | 35484089 | 35484103 | 14 | |
| Deletion | Chr1 | 36789035 | 36789039 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 28096627 | 28096627 | 1 | |
| Insertion | Chr7 | 29161300 | 29161300 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 20817090 | 21006547 | LOC_Os05g35070 |
No Translocation