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| Mutant Information |
|---|
| Mutant Name | FN_772-3-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_772-3-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16586006 | C-T | Homo | ||
| SBS | Chr1 | 5995170 | C-T | Homo | ||
| SBS | Chr10 | 959577 | C-T | HET | ||
| SBS | Chr11 | 14249481 | A-C | HET | ||
| SBS | Chr11 | 16350234 | A-G | HET | LOC_Os11g28410 | |
| SBS | Chr2 | 18432723 | A-G | Homo | ||
| SBS | Chr3 | 29426319 | C-T | Homo | ||
| SBS | Chr4 | 15176071 | G-C | HET | ||
| SBS | Chr4 | 156554 | C-T | HET | ||
| SBS | Chr4 | 17127512 | C-T | Homo | LOC_Os04g28900 | |
| SBS | Chr4 | 19063576 | G-A | Homo | ||
| SBS | Chr4 | 19516834 | A-G | Homo | ||
| SBS | Chr4 | 24960262 | C-T | Homo | ||
| SBS | Chr4 | 31143047 | A-G | Homo | ||
| SBS | Chr4 | 95511 | G-A | HET | ||
| SBS | Chr5 | 15096529 | A-G | Homo | ||
| SBS | Chr5 | 21726940 | C-T | HET | ||
| SBS | Chr5 | 5108442 | A-G | Homo | ||
| SBS | Chr6 | 20299628 | T-G | HET | ||
| SBS | Chr6 | 22051509 | A-G | Homo | ||
| SBS | Chr6 | 23009863 | C-G | HET | ||
| SBS | Chr6 | 4836429 | T-C | HET | ||
| SBS | Chr6 | 9266423 | C-G | HET | ||
| SBS | Chr7 | 14655366 | C-T | HET | ||
| SBS | Chr7 | 15467568 | C-T | HET | LOC_Os07g26780 | |
| SBS | Chr7 | 6557258 | C-T | HET | ||
| SBS | Chr8 | 26531965 | G-A | Homo | LOC_Os08g41990 |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 5863386 | 5863387 | 1 | LOC_Os02g11020 |
| Deletion | Chr2 | 7239539 | 7239542 | 3 | |
| Deletion | Chr11 | 8574326 | 8574328 | 2 | |
| Deletion | Chr3 | 8597719 | 8597723 | 4 | |
| Deletion | Chr9 | 10162636 | 10162637 | 1 | |
| Deletion | Chr1 | 10442455 | 10442460 | 5 | |
| Deletion | Chr11 | 13495040 | 13495051 | 11 | |
| Deletion | Chr3 | 15466573 | 15466582 | 9 | |
| Deletion | Chr5 | 16708682 | 16708684 | 2 | |
| Deletion | Chr8 | 16863044 | 16863052 | 8 | |
| Deletion | Chr9 | 17464076 | 17464082 | 6 | |
| Deletion | Chr8 | 18686522 | 18686532 | 10 | |
| Deletion | Chr12 | 22586453 | 22586455 | 2 | |
| Deletion | Chr7 | 26631031 | 26631035 | 4 | LOC_Os07g44620 |
| Deletion | Chr7 | 29345501 | 29358701 | 13200 | 3 |
| Deletion | Chr7 | 29559001 | 29579701 | 20700 | 3 |
| Deletion | Chr6 | 31029579 | 31029581 | 2 | |
| Deletion | Chr1 | 33058604 | 33058605 | 1 | |
| Deletion | Chr4 | 34306289 | 34306373 | 84 | |
| Deletion | Chr1 | 36101811 | 36101816 | 5 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 29426321 | 29426321 | 1 | |
| Insertion | Chr6 | 747275 | 747275 | 1 | |
| Insertion | Chr8 | 19903555 | 19903555 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 13348599 | 14132358 | 2 |
| Inversion | Chr7 | 29345444 | 29558202 | LOC_Os07g49010 |
| Inversion | Chr7 | 29358699 | 29579719 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 5549223 | Chr7 | 29386062 | 2 |
| Translocation | Chr9 | 17766918 | Chr1 | 24153040 | 2 |