Search Results
| Mutant Information |
|---|
| Mutant Name | FN_777-2-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_777-2-1 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10220914 | C-A | HET | ||
| SBS | Chr1 | 16189725 | C-T | HET | ||
| SBS | Chr1 | 27023076 | G-A | HET | ||
| SBS | Chr1 | 28121981 | G-A | Homo | ||
| SBS | Chr1 | 41352898 | G-A | Homo | ||
| SBS | Chr10 | 8651446 | C-T | HET | ||
| SBS | Chr11 | 20017906 | G-A | Homo | ||
| SBS | Chr11 | 20017911 | G-A | Homo | ||
| SBS | Chr12 | 415462 | C-T | HET | ||
| SBS | Chr12 | 19914170 | C-T | HET | ||
| SBS | Chr12 | 3790376 | C-T | Homo | ||
| SBS | Chr12 | 16178991 | C-T | Homo | ||
| SBS | Chr12 | 22637253 | G-A | Homo | ||
| SBS | Chr12 | 25717172 | A-C | Homo | ||
| SBS | Chr2 | 16642219 | T-A | HET | ||
| SBS | Chr3 | 4821623 | C-T | HET | ||
| SBS | Chr4 | 25603094 | A-G | Homo | ||
| SBS | Chr5 | 2377653 | T-C | HET | ||
| SBS | Chr5 | 23459490 | G-C | HET | ||
| SBS | Chr6 | 7859 | G-A | HET | ||
| SBS | Chr6 | 14676504 | C-T | Homo | ||
| SBS | Chr6 | 26096472 | C-T | Homo | ||
| SBS | Chr6 | 27996313 | C-A | Homo | ||
| SBS | Chr7 | 183642 | C-A | HET | ||
| SBS | Chr7 | 8332200 | G-T | HET | ||
| SBS | Chr7 | 9087153 | A-G | HET | ||
| SBS | Chr7 | 22710315 | G-A | HET | ||
| SBS | Chr7 | 26704345 | A-C | Homo | ||
| SBS | Chr7 | 26704346 | C-A | Homo | ||
| SBS | Chr7 | 26704347 | T-A | Homo | ||
| SBS | Chr8 | 1673060 | A-G | HET | ||
| SBS | Chr8 | 19188275 | C-A | HET | ||
| SBS | Chr8 | 19188276 | C-T | HET | ||
| SBS | Chr8 | 26362668 | C-T | Homo | ||
| SBS | Chr9 | 3059244 | C-T | Homo | ||
| SBS | Chr9 | 3517659 | G-A | Homo |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 184428 | 184441 | 13 | |
| Deletion | Chr1 | 3902277 | 3902278 | 1 | |
| Deletion | Chr7 | 4509337 | 4509338 | 1 | |
| Deletion | Chr5 | 5341918 | 5341919 | 1 | |
| Deletion | Chr1 | 5763801 | 5853601 | 89800 | 19 |
| Deletion | Chr3 | 8595680 | 8595682 | 2 | |
| Deletion | Chr7 | 8906018 | 8906145 | 127 | |
| Deletion | Chr12 | 10272606 | 10272607 | 1 | |
| Deletion | Chr3 | 11451628 | 11451629 | 1 | |
| Deletion | Chr12 | 12897259 | 12897260 | 1 | |
| Deletion | Chr7 | 14546267 | 14546268 | 1 | |
| Deletion | Chr10 | 17664704 | 17664712 | 8 | |
| Deletion | Chr10 | 19763226 | 19763227 | 1 | |
| Deletion | Chr7 | 23360179 | 23360184 | 5 | |
| Deletion | Chr7 | 23921936 | 23921937 | 1 | |
| Deletion | Chr12 | 25710296 | 25710305 | 9 | |
| Deletion | Chr7 | 25980901 | 25985001 | 4100 | LOC_Os07g43390 |
| Deletion | Chr1 | 28134638 | 28134650 | 12 | |
| Deletion | Chr5 | 28711601 | 28733801 | 22200 | 3 |
| Deletion | Chr5 | 28738487 | 28738488 | 1 | |
| Deletion | Chr1 | 35330533 | 35330538 | 5 | LOC_Os01g61060 |
Insertions: 5
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 4095880 | 4823687 | LOC_Os07g09190 |
| Inversion | Chr3 | 5002936 | 5552863 | |
| Inversion | Chr3 | 5002953 | 5555341 | |
| Inversion | Chr10 | 6269558 | 6270712 | |
| Inversion | Chr6 | 19582539 | 19596848 | LOC_Os06g33640 |
| Inversion | Chr1 | 27388151 | 29176558 | LOC_Os01g47840 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 19546528 | Chr12 | 15727819 | |
| Translocation | Chr1 | 22507593 | Chr3 | 4786903 | LOC_Os03g09180 |
| Translocation | Chr1 | 27388166 | Chr7 | 26721993 | 2 |