Search Results
| Mutant Information |
|---|
| Mutant Name | FN_786-4-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_786-4-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 41128822 | G-T | HET | ||
| SBS | Chr1 | 42063680 | G-A | HET | ||
| SBS | Chr1 | 32881113 | C-T | Homo | ||
| SBS | Chr1 | 34447895 | G-A | Homo | ||
| SBS | Chr10 | 3445616 | A-T | Homo | ||
| SBS | Chr10 | 13919436 | C-T | Homo | ||
| SBS | Chr10 | 22597304 | G-A | Homo | ||
| SBS | Chr11 | 4231272 | G-C | HET | ||
| SBS | Chr11 | 11043209 | T-C | Homo | ||
| SBS | Chr12 | 10365767 | C-A | HET | ||
| SBS | Chr12 | 3103375 | G-A | Homo | ||
| SBS | Chr12 | 11668559 | C-T | Homo | ||
| SBS | Chr12 | 15611271 | C-T | Homo | ||
| SBS | Chr12 | 16790299 | G-A | Homo | ||
| SBS | Chr2 | 14790440 | G-C | HET | ||
| SBS | Chr2 | 32107384 | T-A | HET | ||
| SBS | Chr3 | 20763029 | C-T | HET | ||
| SBS | Chr3 | 24302678 | C-T | HET | ||
| SBS | Chr3 | 33650989 | G-A | HET | ||
| SBS | Chr4 | 7003751 | G-T | HET | ||
| SBS | Chr4 | 8316476 | T-A | HET | ||
| SBS | Chr4 | 8316477 | G-A | HET | ||
| SBS | Chr4 | 12383088 | T-C | HET | ||
| SBS | Chr5 | 11256948 | G-A | HET | ||
| SBS | Chr5 | 26442679 | G-C | Homo | LOC_Os05g45620 | |
| SBS | Chr7 | 6773490 | G-A | HET | ||
| SBS | Chr7 | 17012548 | G-T | HET | ||
| SBS | Chr7 | 18083606 | A-G | HET | ||
| SBS | Chr7 | 18858259 | C-A | HET | ||
| SBS | Chr8 | 16752162 | T-C | HET | ||
| SBS | Chr8 | 25197259 | T-G | HET | ||
| SBS | Chr8 | 28319688 | A-T | HET | ||
| SBS | Chr8 | 22811119 | C-T | Homo | ||
| SBS | Chr9 | 3405003 | G-T | HET | ||
| SBS | Chr9 | 9241241 | C-T | HET | LOC_Os09g15220 |
Deletions: 27
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 986867 | 986874 | 7 | |
| Deletion | Chr7 | 4101506 | 4101507 | 1 | |
| Deletion | Chr5 | 5382834 | 5382836 | 2 | |
| Deletion | Chr3 | 6494319 | 6494321 | 2 | LOC_Os03g12320 |
| Deletion | Chr8 | 8810374 | 8810426 | 52 | |
| Deletion | Chr10 | 8876789 | 8876790 | 1 | |
| Deletion | Chr1 | 9110056 | 9110057 | 1 | |
| Deletion | Chr8 | 9184146 | 9184149 | 3 | |
| Deletion | Chr11 | 9837162 | 9837164 | 2 | |
| Deletion | Chr8 | 10436265 | 10436266 | 1 | LOC_Os08g17040 |
| Deletion | Chr4 | 11111867 | 11111875 | 8 | |
| Deletion | Chr9 | 12962789 | 12964643 | 1854 | |
| Deletion | Chr9 | 13607300 | 13607403 | 103 | |
| Deletion | Chr2 | 15660311 | 15660312 | 1 | LOC_Os02g26670 |
| Deletion | Chr12 | 16424575 | 16424592 | 17 | |
| Deletion | Chr4 | 19832256 | 19832261 | 5 | |
| Deletion | Chr8 | 20414398 | 20414408 | 10 | |
| Deletion | Chr11 | 22199647 | 22199652 | 5 | |
| Deletion | Chr1 | 22579958 | 22579968 | 10 | LOC_Os01g40030 |
| Deletion | Chr8 | 22956290 | 22956295 | 5 | |
| Deletion | Chr4 | 24061737 | 24061738 | 1 | LOC_Os04g40500 |
| Deletion | Chr5 | 26177554 | 26177613 | 59 | LOC_Os05g45040 |
| Deletion | Chr5 | 26857374 | 26857378 | 4 | |
| Deletion | Chr1 | 28398978 | 28398980 | 2 | |
| Deletion | Chr7 | 28683609 | 28683610 | 1 | |
| Deletion | Chr5 | 28949201 | 28949801 | 600 | |
| Deletion | Chr1 | 31650842 | 31650849 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 26180459 | 26180459 | 1 | |
| Insertion | Chr4 | 10870298 | 10870298 | 1 |
No Inversion
No Translocation