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| Mutant Information |
|---|
| Mutant Name | FN_788-1-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_788-1-1 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20781396 | A-T | Homo | ||
| SBS | Chr1 | 26580321 | T-A | Homo | ||
| SBS | Chr1 | 27149544 | C-T | HET | ||
| SBS | Chr1 | 32540806 | A-T | HET | ||
| SBS | Chr10 | 4381003 | G-A | HET | ||
| SBS | Chr11 | 15819086 | A-G | HET | ||
| SBS | Chr11 | 19987862 | C-T | HET | ||
| SBS | Chr11 | 22799388 | G-A | HET | ||
| SBS | Chr11 | 25750292 | C-T | HET | ||
| SBS | Chr12 | 7869749 | G-A | Homo | ||
| SBS | Chr2 | 11328001 | G-A | HET | ||
| SBS | Chr3 | 12914702 | T-C | Homo | ||
| SBS | Chr3 | 13009761 | A-G | HET | ||
| SBS | Chr3 | 20047409 | G-A | Homo | ||
| SBS | Chr4 | 22191006 | T-C | Homo | ||
| SBS | Chr4 | 34699721 | G-A | HET | ||
| SBS | Chr4 | 4122115 | G-A | HET | LOC_Os04g07740 | |
| SBS | Chr4 | 5903848 | A-T | Homo | ||
| SBS | Chr5 | 19941128 | A-T | Homo | ||
| SBS | Chr5 | 4321370 | C-A | Homo | ||
| SBS | Chr6 | 13660834 | A-G | HET | ||
| SBS | Chr6 | 15164822 | A-C | HET | ||
| SBS | Chr6 | 5825939 | G-A | Homo | LOC_Os06g11110 | |
| SBS | Chr7 | 17085675 | C-A | Homo | LOC_Os07g29180 | |
| SBS | Chr7 | 24062575 | C-T | Homo | ||
| SBS | Chr8 | 19499521 | G-A | Homo | ||
| SBS | Chr9 | 11115605 | G-T | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 201569 | 201570 | 1 | |
| Deletion | Chr1 | 1886730 | 1886735 | 5 | |
| Deletion | Chr3 | 2119934 | 2119948 | 14 | |
| Deletion | Chr1 | 3043486 | 3043494 | 8 | |
| Deletion | Chr12 | 3170520 | 3170521 | 1 | |
| Deletion | Chr3 | 4592095 | 4592096 | 1 | |
| Deletion | Chr9 | 13114995 | 13114996 | 1 | |
| Deletion | Chr6 | 13660822 | 13660823 | 1 | |
| Deletion | Chr9 | 15811817 | 15811818 | 1 | |
| Deletion | Chr2 | 17473828 | 17473833 | 5 | |
| Deletion | Chr5 | 20239916 | 20239918 | 2 | |
| Deletion | Chr11 | 21164349 | 21164356 | 7 | |
| Deletion | Chr1 | 22499549 | 22499551 | 2 | LOC_Os01g39890 |
| Deletion | Chr11 | 26071117 | 26071123 | 6 | |
| Deletion | Chr6 | 26485431 | 26485434 | 3 | |
| Deletion | Chr4 | 27027549 | 27027552 | 3 | LOC_Os04g45690 |
| Deletion | Chr2 | 29474611 | 29474612 | 1 | |
| Deletion | Chr1 | 32832357 | 32832365 | 8 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 8769305 | 8769305 | 1 | |
| Insertion | Chr9 | 13063289 | 13063290 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 18865023 | 19632548 | |
| Inversion | Chr11 | 21845821 | 22030710 | |
| Inversion | Chr2 | 22482408 | 22569021 | LOC_Os02g37200 |
| Inversion | Chr2 | 22482420 | 22569023 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 15807285 | Chr6 | 26131006 | |
| Translocation | Chr4 | 19346543 | Chr1 | 8071961 | LOC_Os04g32280 |