Search Results
| Mutant Information |
|---|
| Mutant Name | FN_789-2-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_789-2-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6851425 | G-A | HET | ||
| SBS | Chr1 | 26036589 | G-A | Homo | ||
| SBS | Chr10 | 17526740 | C-T | Homo | ||
| SBS | Chr10 | 22948078 | C-A | Homo | ||
| SBS | Chr10 | 22948079 | C-A | Homo | ||
| SBS | Chr11 | 7391556 | G-T | Homo | ||
| SBS | Chr12 | 10844427 | G-A | HET | ||
| SBS | Chr12 | 19304888 | G-C | HET | ||
| SBS | Chr2 | 17274314 | C-T | HET | LOC_Os02g29150 | |
| SBS | Chr2 | 22579738 | C-T | HET | ||
| SBS | Chr2 | 24252623 | T-A | HET | ||
| SBS | Chr2 | 27949115 | T-G | HET | ||
| SBS | Chr2 | 32914946 | G-A | Homo | ||
| SBS | Chr3 | 2613201 | G-A | HET | ||
| SBS | Chr5 | 15273153 | C-G | HET | ||
| SBS | Chr5 | 27196669 | G-A | Homo | ||
| SBS | Chr6 | 29159055 | C-T | HET | ||
| SBS | Chr6 | 18197714 | T-C | Homo | ||
| SBS | Chr6 | 25447842 | A-C | Homo | ||
| SBS | Chr7 | 11171097 | C-T | Homo | LOC_Os07g18874 | |
| SBS | Chr8 | 12032660 | G-C | HET | ||
| SBS | Chr8 | 5558812 | T-G | Homo | ||
| SBS | Chr8 | 15799525 | C-T | Homo | ||
| SBS | Chr9 | 16001476 | T-C | HET |
Deletions: 26
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 726781 | 726782 | 1 | |
| Deletion | Chr9 | 1384701 | 1437601 | 52900 | 9 |
| Deletion | Chr8 | 2503130 | 2503131 | 1 | |
| Deletion | Chr8 | 3364205 | 3364214 | 9 | |
| Deletion | Chr4 | 5865345 | 5865346 | 1 | LOC_Os04g10800 |
| Deletion | Chr10 | 6254288 | 6254289 | 1 | LOC_Os10g11270 |
| Deletion | Chr8 | 7384957 | 7384974 | 17 | |
| Deletion | Chr8 | 7810463 | 7819075 | 8612 | LOC_Os08g13150 |
| Deletion | Chr7 | 8039771 | 8039775 | 4 | |
| Deletion | Chr8 | 8632307 | 8632322 | 15 | LOC_Os08g14390 |
| Deletion | Chr4 | 11484595 | 11484597 | 2 | |
| Deletion | Chr2 | 14388341 | 14388347 | 6 | LOC_Os02g24790 |
| Deletion | Chr2 | 14389180 | 14533338 | 144158 | 28 |
| Deletion | Chr12 | 15173810 | 15173811 | 1 | |
| Deletion | Chr9 | 16213969 | 16213981 | 12 | LOC_Os09g26690 |
| Deletion | Chr9 | 16981174 | 16981175 | 1 | LOC_Os09g27950 |
| Deletion | Chr10 | 18899571 | 18899572 | 1 | |
| Deletion | Chr5 | 19955683 | 19955684 | 1 | |
| Deletion | Chr7 | 21006617 | 21006629 | 12 | |
| Deletion | Chr12 | 23933401 | 23933409 | 8 | LOC_Os12g38920 |
| Deletion | Chr3 | 25224996 | 25224997 | 1 | |
| Deletion | Chr5 | 26814700 | 26814712 | 12 | |
| Deletion | Chr2 | 31176889 | 31176898 | 9 | LOC_Os02g50970 |
| Deletion | Chr2 | 31256427 | 31256431 | 4 | |
| Deletion | Chr2 | 31811507 | 31811519 | 12 | |
| Deletion | Chr1 | 36477243 | 36477244 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 335824 | 335824 | 1 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 4729248 | 7773725 | LOC_Os08g13080 |
| Inversion | Chr8 | 4729259 | 6749576 | |
| Inversion | Chr6 | 8104035 | 8524167 | 2 |
| Inversion | Chr6 | 24233155 | 24263813 | LOC_Os06g40650 |
| Inversion | Chr3 | 29624102 | 29725094 | LOC_Os03g51830 |
| Inversion | Chr3 | 29640883 | 29725095 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 24582909 | Chr6 | 24263959 | LOC_Os04g41470 |