Search Results
| Mutant Information |
|---|
| Mutant Name | FN_798-4-2 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_798-4-2 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 42140028 | G-A | HET | ||
| SBS | Chr1 | 42140029 | T-A | HET | ||
| SBS | Chr1 | 479013 | T-C | Homo | ||
| SBS | Chr1 | 32301212 | A-G | Homo | ||
| SBS | Chr11 | 21702935 | A-T | Homo | ||
| SBS | Chr2 | 15297164 | C-T | HET | LOC_Os02g26060 | |
| SBS | Chr2 | 25853882 | C-T | HET | ||
| SBS | Chr2 | 30503079 | T-A | HET | ||
| SBS | Chr2 | 32775476 | G-A | HET | ||
| SBS | Chr3 | 26566440 | G-T | Homo | ||
| SBS | Chr3 | 28172466 | A-T | Homo | LOC_Os03g49500 | |
| SBS | Chr4 | 15863322 | G-T | HET | ||
| SBS | Chr4 | 17028477 | C-T | HET | ||
| SBS | Chr4 | 11525328 | T-C | Homo | ||
| SBS | Chr4 | 25126469 | C-T | Homo | ||
| SBS | Chr6 | 29388123 | T-A | Homo | ||
| SBS | Chr7 | 10571808 | G-A | Homo | ||
| SBS | Chr7 | 20224974 | T-C | Homo | ||
| SBS | Chr7 | 20224976 | T-C | Homo | ||
| SBS | Chr9 | 5608116 | C-T | HET | ||
| SBS | Chr9 | 12089445 | G-T | HET | ||
| SBS | Chr9 | 14893285 | G-A | HET | ||
| SBS | Chr9 | 1337031 | G-A | Homo | LOC_Os09g02840 | |
| SBS | Chr9 | 9236679 | G-C | Homo |
Deletions: 26
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 248787 | 248792 | 5 | |
| Deletion | Chr9 | 983310 | 983311 | 1 | LOC_Os09g02380 |
| Deletion | Chr10 | 1955991 | 1956036 | 45 | |
| Deletion | Chr3 | 2164094 | 2164108 | 14 | |
| Deletion | Chr1 | 3329367 | 3329373 | 6 | |
| Deletion | Chr10 | 3351861 | 3351862 | 1 | |
| Deletion | Chr9 | 4684863 | 4684864 | 1 | LOC_Os09g08870 |
| Deletion | Chr12 | 4878845 | 4878870 | 25 | |
| Deletion | Chr4 | 6340586 | 6340588 | 2 | |
| Deletion | Chr10 | 7656189 | 7656194 | 5 | |
| Deletion | Chr8 | 8344620 | 8344622 | 2 | |
| Deletion | Chr11 | 10669796 | 10669803 | 7 | |
| Deletion | Chr8 | 18454479 | 18454480 | 1 | |
| Deletion | Chr10 | 18464066 | 18470492 | 6426 | LOC_Os10g34650 |
| Deletion | Chr10 | 18566004 | 18566010 | 6 | |
| Deletion | Chr7 | 18800930 | 18800931 | 1 | |
| Deletion | Chr8 | 20721545 | 20721553 | 8 | |
| Deletion | Chr4 | 21577006 | 21577007 | 1 | |
| Deletion | Chr7 | 22646259 | 22646378 | 119 | |
| Deletion | Chr4 | 26795628 | 26795637 | 9 | |
| Deletion | Chr2 | 27359843 | 27360673 | 830 | LOC_Os02g45110 |
| Deletion | Chr1 | 28320826 | 28320836 | 10 | |
| Deletion | Chr1 | 31655248 | 31655254 | 6 | |
| Deletion | Chr3 | 36262642 | 36262646 | 4 | |
| Deletion | Chr1 | 39860809 | 39867929 | 7120 | 3 |
| Deletion | Chr1 | 40999632 | 40999635 | 3 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 28878404 | 29803302 | LOC_Os06g49185 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 16998636 | Chr2 | 3914414 | LOC_Os02g07560 |
Tandem duplications: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Tandem Duplication | Chr4 | 13817647 | 13817849 | 202 |