Search Results
| Mutant Information |
|---|
| Mutant Name | FN_807-3-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_807-3-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9235091 | G-A | Homo | LOC_Os01g16290 | |
| SBS | Chr1 | 39843311 | G-T | Homo | ||
| SBS | Chr1 | 9004685 | G-A | Homo | ||
| SBS | Chr11 | 26035325 | C-T | HET | ||
| SBS | Chr11 | 2263989 | G-A | Homo | ||
| SBS | Chr11 | 12728673 | C-T | Homo | ||
| SBS | Chr12 | 10816464 | C-T | HET | ||
| SBS | Chr2 | 11752977 | A-T | HET | ||
| SBS | Chr2 | 11865721 | C-T | HET | LOC_Os02g20140 | |
| SBS | Chr2 | 21379150 | C-T | HET | ||
| SBS | Chr3 | 28801960 | G-A | HET | ||
| SBS | Chr3 | 28904256 | G-T | HET | ||
| SBS | Chr3 | 32365244 | C-A | HET | ||
| SBS | Chr3 | 35857175 | T-C | HET | ||
| SBS | Chr3 | 18193467 | G-T | Homo | ||
| SBS | Chr4 | 443595 | A-G | HET | LOC_Os04g01650 | |
| SBS | Chr4 | 1683832 | G-A | HET | ||
| SBS | Chr4 | 13693924 | A-G | Homo | ||
| SBS | Chr4 | 25834734 | C-T | Homo | ||
| SBS | Chr4 | 33089651 | A-C | Homo | ||
| SBS | Chr5 | 9294754 | A-G | Homo | ||
| SBS | Chr5 | 21405771 | G-A | Homo | ||
| SBS | Chr6 | 17521093 | G-A | Homo | ||
| SBS | Chr7 | 8384447 | C-T | HET | ||
| SBS | Chr7 | 6022873 | A-T | Homo | ||
| SBS | Chr7 | 7639948 | C-G | Homo | ||
| SBS | Chr7 | 21461588 | T-A | Homo | ||
| SBS | Chr8 | 8418207 | G-A | HET | LOC_Os08g14050 | |
| SBS | Chr8 | 22960217 | C-A | HET | ||
| SBS | Chr8 | 25248643 | T-A | HET | LOC_Os08g39850 | |
| SBS | Chr9 | 14478018 | T-A | HET | ||
| SBS | Chr9 | 550809 | G-A | Homo |
Deletions: 26
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 1683837 | 1683838 | 1 | |
| Deletion | Chr5 | 2157660 | 2157661 | 1 | |
| Deletion | Chr1 | 3736279 | 3736280 | 1 | LOC_Os01g07780 |
| Deletion | Chr5 | 3979247 | 3979253 | 6 | |
| Deletion | Chr7 | 4298548 | 4298553 | 5 | |
| Deletion | Chr8 | 5208624 | 5210246 | 1622 | LOC_Os08g08960 |
| Deletion | Chr10 | 5691064 | 5691078 | 14 | |
| Deletion | Chr5 | 6964436 | 6964451 | 15 | |
| Deletion | Chr9 | 7296486 | 7296670 | 184 | LOC_Os09g12730 |
| Deletion | Chr10 | 8402081 | 8402082 | 1 | |
| Deletion | Chr5 | 9204001 | 9213201 | 9200 | 2 |
| Deletion | Chr12 | 12497956 | 12497965 | 9 | LOC_Os12g22190 |
| Deletion | Chr10 | 13167529 | 13167533 | 4 | |
| Deletion | Chr4 | 13694247 | 13694537 | 290 | 2 |
| Deletion | Chr12 | 16740567 | 16740568 | 1 | |
| Deletion | Chr10 | 17502702 | 17502703 | 1 | |
| Deletion | Chr3 | 17911889 | 17911890 | 1 | |
| Deletion | Chr6 | 20274002 | 20274042 | 40 | |
| Deletion | Chr3 | 20856008 | 20856019 | 11 | |
| Deletion | Chr2 | 21239552 | 21239553 | 1 | |
| Deletion | Chr6 | 21800294 | 21800296 | 2 | |
| Deletion | Chr11 | 23543109 | 23543115 | 6 | LOC_Os11g39530 |
| Deletion | Chr1 | 24689274 | 24689277 | 3 | |
| Deletion | Chr2 | 26043189 | 26043190 | 1 | |
| Deletion | Chr1 | 26582134 | 26582135 | 1 | |
| Deletion | Chr3 | 30629190 | 30660928 | 31738 | 6 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 3176999 | 3177013 | 15 | |
| Insertion | Chr3 | 6933511 | 6933511 | 1 | |
| Insertion | Chr9 | 17298029 | 17298029 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 13269092 | 14030414 | |
| Inversion | Chr4 | 13694247 | 14030402 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 10921526 | Chr4 | 13694257 |