Search Results
| Mutant Information |
|---|
| Mutant Name | FN_809-6-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_809-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32037715 | A-G | HET | ||
| SBS | Chr1 | 16168836 | G-A | Homo | LOC_Os01g28870 | |
| SBS | Chr10 | 5898301 | C-A | Homo | ||
| SBS | Chr10 | 11689452 | G-T | Homo | ||
| SBS | Chr11 | 24871543 | G-A | HET | ||
| SBS | Chr11 | 17271385 | G-T | Homo | ||
| SBS | Chr12 | 8067230 | T-A | Homo | LOC_Os12g14200 | |
| SBS | Chr12 | 9864108 | C-A | Homo | ||
| SBS | Chr2 | 27534566 | G-A | HET | ||
| SBS | Chr3 | 36102178 | C-T | HET | ||
| SBS | Chr3 | 9586779 | C-T | Homo | ||
| SBS | Chr3 | 11016083 | T-C | Homo | ||
| SBS | Chr3 | 25577455 | C-T | Homo | ||
| SBS | Chr5 | 27719417 | G-A | Homo | ||
| SBS | Chr6 | 7683770 | T-A | Homo | ||
| SBS | Chr6 | 24142303 | A-G | Homo | ||
| SBS | Chr7 | 10706873 | C-T | HET | ||
| SBS | Chr7 | 26867193 | G-A | HET | ||
| SBS | Chr7 | 27276651 | G-A | HET | ||
| SBS | Chr8 | 13298314 | C-G | HET | LOC_Os08g22020 | |
| SBS | Chr8 | 19070282 | C-G | HET | ||
| SBS | Chr8 | 2316747 | C-T | Homo | ||
| SBS | Chr8 | 8514488 | T-C | Homo | LOC_Os08g14230 | |
| SBS | Chr9 | 1446209 | A-G | Homo |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 1155602 | 1155623 | 21 | |
| Deletion | Chr2 | 1462461 | 1536540 | 74079 | 9 |
| Deletion | Chr4 | 1468686 | 1468694 | 8 | LOC_Os04g03420 |
| Deletion | Chr10 | 2165624 | 2165626 | 2 | |
| Deletion | Chr8 | 5171501 | 5171502 | 1 | |
| Deletion | Chr5 | 6072765 | 6072766 | 1 | |
| Deletion | Chr8 | 8281781 | 8281782 | 1 | |
| Deletion | Chr8 | 9104774 | 9104780 | 6 | |
| Deletion | Chr2 | 9388401 | 9440001 | 51600 | 8 |
| Deletion | Chr2 | 9843473 | 9843475 | 2 | |
| Deletion | Chr6 | 11985232 | 11985233 | 1 | |
| Deletion | Chr7 | 15532307 | 15532308 | 1 | |
| Deletion | Chr11 | 17587944 | 17587945 | 1 | |
| Deletion | Chr10 | 18584539 | 18584548 | 9 | |
| Deletion | Chr10 | 19648219 | 19648220 | 1 | |
| Deletion | Chr12 | 21510886 | 21510887 | 1 | |
| Deletion | Chr5 | 21565061 | 21565067 | 6 | |
| Deletion | Chr1 | 21761641 | 21761642 | 1 | |
| Deletion | Chr2 | 22099381 | 22099382 | 1 | 2 |
| Deletion | Chr9 | 22702426 | 22702433 | 7 | |
| Deletion | Chr2 | 25540792 | 25540793 | 1 | |
| Deletion | Chr4 | 27431928 | 27431972 | 44 | LOC_Os04g46300 |
| Deletion | Chr2 | 33385857 | 33385858 | 1 |
Insertions: 6
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 9463522 | 9893082 | LOC_Os08g16230 |
No Translocation