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| Mutant Information |
|---|
| Mutant Name | FN_812-4-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_812-4-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16173290 | A-G | HET | ||
| SBS | Chr1 | 30116514 | C-T | Homo | ||
| SBS | Chr1 | 35049470 | G-T | Homo | ||
| SBS | Chr10 | 1038127 | G-A | HET | ||
| SBS | Chr11 | 21332729 | G-T | HET | ||
| SBS | Chr12 | 17503899 | C-T | HET | ||
| SBS | Chr12 | 8867499 | G-A | Homo | ||
| SBS | Chr12 | 9519717 | T-C | Homo | LOC_Os12g16630 | |
| SBS | Chr2 | 26493215 | G-A | Homo | ||
| SBS | Chr2 | 26959886 | A-G | Homo | ||
| SBS | Chr2 | 27088131 | A-G | Homo | ||
| SBS | Chr2 | 35721192 | T-C | Homo | ||
| SBS | Chr3 | 22574266 | A-C | HET | ||
| SBS | Chr3 | 30215260 | T-C | Homo | ||
| SBS | Chr4 | 7094410 | T-A | HET | ||
| SBS | Chr5 | 12122345 | C-T | Homo | ||
| SBS | Chr6 | 1350322 | G-A | HET | ||
| SBS | Chr6 | 16939242 | C-T | Homo | ||
| SBS | Chr6 | 27404381 | A-G | HET | ||
| SBS | Chr6 | 6075060 | T-A | HET | ||
| SBS | Chr6 | 6959951 | C-T | HET | ||
| SBS | Chr6 | 7910883 | C-A | HET | ||
| SBS | Chr7 | 10269688 | G-C | Homo | ||
| SBS | Chr7 | 10925483 | A-T | Homo | ||
| SBS | Chr7 | 11598160 | T-A | Homo | LOC_Os07g19570 | |
| SBS | Chr7 | 1693401 | G-A | HET | ||
| SBS | Chr7 | 1693402 | C-A | HET | LOC_Os07g04010 | |
| SBS | Chr8 | 18647200 | T-A | HET | ||
| SBS | Chr9 | 12434819 | T-G | Homo | ||
| SBS | Chr9 | 14815473 | C-T | Homo | ||
| SBS | Chr9 | 15817659 | C-T | Homo | ||
| SBS | Chr9 | 19864148 | T-A | Homo | LOC_Os09g33630 | |
| SBS | Chr9 | 4076991 | G-A | Homo | ||
| SBS | Chr9 | 5709653 | G-C | Homo | ||
| SBS | Chr9 | 6495026 | G-A | Homo | ||
| SBS | Chr9 | 9367809 | A-C | Homo | LOC_Os09g15330 |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 707278 | 707982 | 704 | |
| Deletion | Chr4 | 1806359 | 1806361 | 2 | |
| Deletion | Chr8 | 1807714 | 1807715 | 1 | |
| Deletion | Chr3 | 5134001 | 5169301 | 35300 | 6 |
| Deletion | Chr1 | 6030265 | 6030266 | 1 | |
| Deletion | Chr9 | 6385901 | 6388301 | 2400 | |
| Deletion | Chr6 | 8315392 | 8315396 | 4 | |
| Deletion | Chr1 | 13459754 | 13459766 | 12 | LOC_Os01g23920 |
| Deletion | Chr4 | 14100978 | 14101019 | 41 | |
| Deletion | Chr11 | 14759309 | 14759310 | 1 | |
| Deletion | Chr3 | 20357786 | 20357791 | 5 | LOC_Os03g36710 |
| Deletion | Chr4 | 20933866 | 20933910 | 44 | |
| Deletion | Chr4 | 21212989 | 21212991 | 2 | |
| Deletion | Chr3 | 21782781 | 21782788 | 7 | LOC_Os03g39220 |
| Deletion | Chr11 | 21968216 | 21968222 | 6 | |
| Deletion | Chr5 | 25511379 | 25511423 | 44 | |
| Deletion | Chr4 | 26134526 | 26134537 | 11 | |
| Deletion | Chr12 | 26576840 | 26576858 | 18 | |
| Deletion | Chr8 | 27820285 | 27820287 | 2 | |
| Deletion | Chr3 | 29053856 | 29053860 | 4 | |
| Deletion | Chr4 | 29288928 | 29288935 | 7 |
Insertions: 5
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 11393009 | Chr9 | 6385868 |