Search Results
| Mutant Information |
|---|
| Mutant Name | FN_814-7-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_814-7-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 4799340 | C-T | Homo | ||
| SBS | Chr1 | 13454780 | A-G | Homo | ||
| SBS | Chr1 | 26829784 | A-G | Homo | LOC_Os01g46990 | |
| SBS | Chr10 | 4491390 | A-G | HET | ||
| SBS | Chr11 | 19904822 | C-T | HET | ||
| SBS | Chr11 | 1423160 | A-T | Homo | ||
| SBS | Chr11 | 9964222 | G-A | Homo | ||
| SBS | Chr12 | 5551351 | A-T | Homo | ||
| SBS | Chr2 | 408858 | C-A | HET | ||
| SBS | Chr2 | 7203446 | G-T | HET | ||
| SBS | Chr2 | 29560268 | T-C | HET | ||
| SBS | Chr3 | 18764096 | C-T | HET | ||
| SBS | Chr3 | 29909475 | G-C | HET | ||
| SBS | Chr3 | 33595268 | T-C | HET | ||
| SBS | Chr3 | 33878822 | G-A | HET | ||
| SBS | Chr3 | 7245945 | G-A | Homo | ||
| SBS | Chr3 | 7406096 | C-T | Homo | LOC_Os03g13690 | |
| SBS | Chr3 | 7406097 | A-T | Homo | LOC_Os03g13690 | |
| SBS | Chr3 | 26035784 | C-G | Homo | ||
| SBS | Chr4 | 21945637 | G-A | HET | ||
| SBS | Chr4 | 22059472 | A-T | HET | ||
| SBS | Chr4 | 8253526 | T-A | Homo | ||
| SBS | Chr5 | 21171053 | C-A | HET | ||
| SBS | Chr5 | 21890010 | A-G | Homo | ||
| SBS | Chr5 | 21989557 | A-G | Homo | LOC_Os05g37580 | |
| SBS | Chr5 | 28678262 | C-T | Homo | ||
| SBS | Chr6 | 15534405 | G-A | HET | ||
| SBS | Chr6 | 28319315 | A-T | HET | ||
| SBS | Chr6 | 28640245 | A-C | HET | ||
| SBS | Chr6 | 29741821 | G-A | HET | ||
| SBS | Chr7 | 7273187 | C-A | Homo | ||
| SBS | Chr8 | 270907 | G-C | Homo | ||
| SBS | Chr8 | 6136099 | T-A | Homo | ||
| SBS | Chr8 | 13630189 | C-T | Homo | ||
| SBS | Chr8 | 18834290 | T-C | Homo | ||
| SBS | Chr8 | 26411233 | T-C | Homo | ||
| SBS | Chr9 | 9709119 | C-T | HET |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 589199 | 589215 | 16 | LOC_Os07g01970 |
| Deletion | Chr11 | 1427284 | 1427285 | 1 | |
| Deletion | Chr11 | 1821687 | 1821688 | 1 | |
| Deletion | Chr8 | 2696631 | 2696632 | 1 | |
| Deletion | Chr2 | 3681944 | 3681952 | 8 | |
| Deletion | Chr11 | 3933305 | 3933306 | 1 | |
| Deletion | Chr11 | 3933307 | 3933308 | 1 | |
| Deletion | Chr4 | 4030766 | 4030774 | 8 | LOC_Os04g07580 |
| Deletion | Chr7 | 4223545 | 4223558 | 13 | |
| Deletion | Chr3 | 4316834 | 4316835 | 1 | |
| Deletion | Chr12 | 5784277 | 5784278 | 1 | |
| Deletion | Chr2 | 7240703 | 7240899 | 196 | |
| Deletion | Chr8 | 12437216 | 12437226 | 10 | |
| Deletion | Chr4 | 12586206 | 12586230 | 24 | |
| Deletion | Chr11 | 14550168 | 14550172 | 4 | |
| Deletion | Chr5 | 16402465 | 16402467 | 2 | |
| Deletion | Chr1 | 17545688 | 17545692 | 4 | |
| Deletion | Chr7 | 18714669 | 18714671 | 2 | LOC_Os07g31530 |
| Deletion | Chr8 | 19358065 | 19358074 | 9 | |
| Deletion | Chr12 | 20264130 | 20264135 | 5 | |
| Deletion | Chr3 | 28666488 | 28666518 | 30 | LOC_Os03g50290 |
| Deletion | Chr3 | 29051976 | 29051981 | 5 | |
| Deletion | Chr6 | 29744398 | 29744399 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 25590815 | 25590840 | 26 | |
| Insertion | Chr5 | 26868252 | 26868252 | 1 | |
| Insertion | Chr5 | 27779923 | 27779923 | 1 | |
| Insertion | Chr6 | 12398587 | 12398588 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 16538814 | 16576369 | LOC_Os06g29020 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 31213912 | Chr11 | 1423197 | LOC_Os06g51520 |
Tandem duplications: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Tandem Duplication | Chr4 | 21896415 | 22470800 | 574385 | 87 |