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| Mutant Information |
|---|
| Mutant Name | FN_815-4-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_815-4-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13827129 | A-T | HET | ||
| SBS | Chr1 | 25732946 | C-T | Homo | LOC_Os01g45330 | |
| SBS | Chr1 | 32784910 | C-T | HET | ||
| SBS | Chr1 | 33715503 | T-A | HET | ||
| SBS | Chr10 | 11148483 | C-A | HET | ||
| SBS | Chr10 | 20755009 | G-A | HET | ||
| SBS | Chr10 | 7350190 | C-T | HET | LOC_Os10g13570 | |
| SBS | Chr11 | 15962390 | G-T | HET | ||
| SBS | Chr11 | 6369860 | G-T | HET | ||
| SBS | Chr12 | 1487391 | A-C | Homo | ||
| SBS | Chr12 | 24758534 | C-T | Homo | ||
| SBS | Chr2 | 11293172 | T-C | Homo | ||
| SBS | Chr2 | 18002661 | C-T | HET | ||
| SBS | Chr2 | 6592097 | T-C | Homo | LOC_Os02g12630 | |
| SBS | Chr3 | 1003855 | T-A | Homo | ||
| SBS | Chr3 | 21851216 | C-T | HET | LOC_Os03g39330 | |
| SBS | Chr3 | 24588092 | G-A | HET | ||
| SBS | Chr4 | 23388370 | A-G | Homo | ||
| SBS | Chr4 | 24716803 | T-C | Homo | ||
| SBS | Chr6 | 10644199 | A-T | Homo | ||
| SBS | Chr6 | 20645080 | T-G | HET | ||
| SBS | Chr6 | 25598792 | T-A | Homo | ||
| SBS | Chr6 | 9051670 | C-G | Homo | ||
| SBS | Chr7 | 17382035 | C-T | Homo | ||
| SBS | Chr7 | 24373088 | G-C | Homo | ||
| SBS | Chr7 | 27940196 | A-G | Homo | ||
| SBS | Chr8 | 14054782 | A-G | Homo | ||
| SBS | Chr9 | 3297522 | T-C | Homo |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 2059243 | 2059246 | 3 | |
| Deletion | Chr1 | 3678300 | 3678308 | 8 | |
| Deletion | Chr7 | 3689819 | 3689830 | 11 | |
| Deletion | Chr2 | 6365407 | 6365448 | 41 | |
| Deletion | Chr8 | 6511054 | 6528350 | 17296 | 3 |
| Deletion | Chr2 | 6573125 | 6573134 | 9 | |
| Deletion | Chr6 | 8108794 | 8108795 | 1 | |
| Deletion | Chr10 | 14162033 | 14162037 | 4 | LOC_Os10g26920 |
| Deletion | Chr2 | 14476598 | 14476604 | 6 | |
| Deletion | Chr1 | 19541725 | 19541726 | 1 | |
| Deletion | Chr10 | 20837521 | 20837522 | 1 | |
| Deletion | Chr12 | 22498170 | 22498171 | 1 | |
| Deletion | Chr12 | 22968162 | 22968175 | 13 | 2 |
| Deletion | Chr7 | 25118900 | 25118913 | 13 | |
| Deletion | Chr12 | 25586510 | 25586512 | 2 | |
| Deletion | Chr2 | 27033001 | 27033004 | 3 | LOC_Os02g44610 |
| Deletion | Chr5 | 28994536 | 28994548 | 12 | |
| Deletion | Chr3 | 30791728 | 30791738 | 10 | |
| Deletion | Chr1 | 32471898 | 32471899 | 1 | |
| Deletion | Chr4 | 33412049 | 33412051 | 2 | |
| Deletion | Chr1 | 40878767 | 40878792 | 25 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 18124944 | 18124949 | 6 | |
| Insertion | Chr11 | 17558668 | 17558669 | 2 | |
| Insertion | Chr3 | 3240449 | 3240449 | 1 | |
| Insertion | Chr5 | 22677418 | 22677418 | 1 |
No Inversion
No Translocation