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| Mutant Information |
|---|
| Mutant Name | FN_822-5-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_822-5-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27113676 | C-T | Homo | ||
| SBS | Chr10 | 21756264 | G-A | HET | ||
| SBS | Chr11 | 11761931 | T-A | HET | ||
| SBS | Chr11 | 13533938 | T-C | HET | ||
| SBS | Chr11 | 18838613 | G-A | Homo | ||
| SBS | Chr11 | 19289516 | G-T | HET | LOC_Os11g32660 | |
| SBS | Chr11 | 19289517 | G-T | HET | LOC_Os11g32660 | |
| SBS | Chr11 | 20430566 | A-T | HET | ||
| SBS | Chr11 | 21744921 | C-A | HET | ||
| SBS | Chr11 | 21961900 | A-G | HET | ||
| SBS | Chr11 | 26852012 | A-C | HET | ||
| SBS | Chr11 | 4002619 | A-G | HET | ||
| SBS | Chr12 | 2461217 | A-G | HET | LOC_Os12g05430 | |
| SBS | Chr12 | 426311 | G-A | HET | ||
| SBS | Chr2 | 2791140 | C-T | HET | ||
| SBS | Chr2 | 29887463 | G-A | HET | ||
| SBS | Chr2 | 3598467 | C-T | HET | ||
| SBS | Chr3 | 2425477 | C-T | Homo | ||
| SBS | Chr3 | 28642236 | G-A | HET | LOC_Os03g50230 | |
| SBS | Chr3 | 6081651 | C-A | Homo | ||
| SBS | Chr3 | 6178931 | G-T | Homo | ||
| SBS | Chr3 | 7129959 | C-T | HET | ||
| SBS | Chr4 | 16345111 | G-A | Homo | ||
| SBS | Chr5 | 12390261 | C-T | HET | ||
| SBS | Chr5 | 1965199 | A-G | Homo | ||
| SBS | Chr5 | 2140981 | C-T | Homo | ||
| SBS | Chr6 | 26074350 | A-G | HET | ||
| SBS | Chr7 | 19780290 | C-A | HET | ||
| SBS | Chr8 | 24064985 | C-T | HET | ||
| SBS | Chr8 | 6521795 | C-T | Homo | ||
| SBS | Chr9 | 11716376 | G-C | Homo | ||
| SBS | Chr9 | 13874824 | A-T | Homo | ||
| SBS | Chr9 | 16146077 | G-A | Homo | ||
| SBS | Chr9 | 19300652 | C-G | Homo | ||
| SBS | Chr9 | 8394016 | G-C | Homo |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 3666960 | 3666964 | 4 | |
| Deletion | Chr7 | 4270180 | 4270181 | 1 | |
| Deletion | Chr6 | 7199964 | 7199965 | 1 | LOC_Os06g13110 |
| Deletion | Chr6 | 9824385 | 9824387 | 2 | LOC_Os06g16950 |
| Deletion | Chr11 | 9936522 | 9936528 | 6 | |
| Deletion | Chr4 | 10961393 | 10961394 | 1 | |
| Deletion | Chr4 | 12593537 | 12593545 | 8 | |
| Deletion | Chr6 | 15486201 | 16120201 | 634000 | 94 |
| Deletion | Chr7 | 15587623 | 15587632 | 9 | |
| Deletion | Chr11 | 16111420 | 16111421 | 1 | |
| Deletion | Chr4 | 19775887 | 19775894 | 7 | |
| Deletion | Chr11 | 21492498 | 21492534 | 36 | LOC_Os11g36450 |
| Deletion | Chr7 | 25980901 | 25985001 | 4100 | LOC_Os07g43390 |
| Deletion | Chr2 | 27505420 | 27505423 | 3 | |
| Deletion | Chr2 | 29119039 | 29119040 | 1 | LOC_Os02g47660 |
| Deletion | Chr1 | 35544374 | 35544378 | 4 | |
| Deletion | Chr1 | 40944074 | 40944108 | 34 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 12717709 | 12717709 | 1 | |
| Insertion | Chr11 | 28956660 | 28956660 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 4240475 | 7368020 | LOC_Os05g13300 |
| Inversion | Chr11 | 12834973 | 13511488 | |
| Inversion | Chr7 | 17300169 | 17451567 | |
| Inversion | Chr11 | 17516679 | 21973561 | LOC_Os11g30130 |
No Translocation